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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccag

Basic information

species Vitis vinifera
transcript Vv08s0007g09000.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 4
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgt-attggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaa-----ttgtcatcagaacctct------tgccttattttccag------------------------------
 ||  ||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||||  |||||||| || ||||| |  || ||||| ||||||||||| ||     |  | |  | | |      |     |  |     ||   |       | |||| |      | |   ||| ||| |        |  |  ||  ||| |                              
TCTCCTGAAAGGTCGCAATGCGTGGTATGGGCAAATGCTAGCGAAGGGAGAACTGAGCCCTGACATGGGCGACAGCATCAAGGGGAAGGGGATGATTCAGgttatctcataaaactactcattattttccccgaaagttatatgaattttgagcgtatttttgaagaatgctggaagtcaaaacttgcaaaagatatcacatcatcctggatataacctgttcacttttcactctacag

upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G155348_T01 (Zea mays), 5'ss of exon 4
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaaca------gttcaactgggaaaaca-atattttcttctttggaattgtcatcagaacctcttgccttattttccag
 || || ||||| |||||||| |||||||| |||||| | |||||||| ||  |||| |  |||||||||||||| || |  || |||||||||||||||||| |||  |||| | ||| |||  ||         |||  | |  || || |  |     ||  | | | | |  |||| |  |        || |   ||  
TCTCTTAAAAGGTCGCAATGCATGGTATGGGCAAATGCTTGCCAAGGGAGAGTTGAGTCCTGACATGGGTGATAGTATCAAGGGGAAGGGAATGATTCAGgtaatgga-atgacttttttctttccattttgtcttgttttattctgagaagatgtcaaagctattatagtacta-catccgttctcgaatatttgtcgccc--

upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G31730.1 (Glycine max), 5'ss of exon 3
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccag--------
| |||| ||||| || ||||| ||||||||||| |||||||| |||||  || | || |  ||||||||||| |||||||||||||| ||||||||||||||||   || | ||  || |    |    ||||   ||   ||    ||||  | |  |   || |  | |   || ||  |||  |  || |   |        
CTTGTTAAAAGGTCGTAATGCTTGGTATGGCCAGATGTTAGCTAAGGGTCAATTAAGACCAGACATGGGTGACAGCATTAGTGGCAAAGGAATGATTCAGgtatatttcgtaatgtttcat---gtcctagttt--cttccaagctcatatgctatgttcctgactcctgaggtgagccaattgtgtctttataatgtgaaagtt

upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 4
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttgg-aattgtcatcagaacctcttgccttattttccag--
  |  | ||||| || || || |||||||| || |||||||| ||||| ||| | ||||  ||||||||||| ||||| |||||||| ||||||||||||||||      | ||| |  ||||   |      ||||    |    ||  |  |    | ||  |||||   |  | |         |  | |   |   
TTTACTAAAAGGTCGTAACGCATGGTATGGTCAGATGTTAGCTAAGGGTGAATTAAGCCCAGACATGGGTGACAGCATCAGTGGCAAAGGAATGATTCAGgtatgttctgtaattttccacttattagtttcccaacacctattctaaattccttaggtgtgccaattgcactttggaatgtacaaatagtataatatgt

upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G28970.1 (Glycine max), 5'ss of exon 3
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttg--ccttattttccag-
| |||| |||||||| || || ||||||||||| |||||||| |||||  || | || |  ||||||||||| || ||||||||||| ||||||||||||||||   |  | ||| || |  |   |     |         | |   ||| |||||  |  |   || ||   | | || |      | |   | ||  
CTTGTTAAAAGGCCGTAACGCTTGGTATGGCCAGATGTTAGCTAAGGGTCAATTAAGACCAGACATGGGTGACAGTATTAGTGGCAAAGGAATGATTCAGgtatattttgtaatttttcatgtcctagtttcttccaaactcatatgctatgttcttgatcaggtgtgccaattgcatctttaaaatgtgaaagttcaat

upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G15900.1 (Glycine max), 5'ss of exon 3
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgccttattttccag-------
  |  | ||||| || || || |||||||| || |||||||| ||||| ||| | ||||  ||||||||||| ||||| |||||||| |||||||||||||||       | ||| |  ||||   |  | |  || ||  ||   | ||||||||||     |  | |  ||  ||   |||   | | |||| |        
TTTACTAAAAGGTCGTAACGCATGGTATGGTCAGATGTTAGCTAAGGGTGAATTAAGCCCAGACATGGGTGACAGCATCAGTGGCAAAGGAATGATTCAGgtaagttcagtaattttccacttattagtaat--aagtgaaaagttattattttcttcccaacacctat--tctaaattccttaggtcactttcgaatgtacaa

upper sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G41540.2 (Arabidopsis thaliana), 5'ss of exon 4
CCTGTTGAAAGGCCGCAATGCGTGGTATGGCCAAATGTTAGCCAAGGGGGAACTGAGCCTGGACATGGGTGATAGCATTAGTGGCAAGGGAATGATTCAGgtattggtcatgattctttacttggcaacagttcaactgggaaaacaatattttcttctttggaattgtcatcagaacctcttgcctt-attttccag
| | || ||||| || ||||| ||||| || |||||| | || ||||| ||| | |     ||||||||||||||||| || ||||||||||||||||||||| |     | ||   |||      | |  || ||    |     ||| ||||  | | ||   |  | || || |  |      ||  ||    ||
CTTATTAAAAGGACGTAATGCATGGTACGGTCAAATGCTGGCAAAGGGTGAAATAAATAGAGACATGGGTGATAGCATAAGCGGCAAGGGAATGATTCAGgtact-----taatctgttagaacaaagcc-ttgaaagaagtttgaaatgttttggtatctgttttgcttatgaggatgtgggatttttgttgaatag