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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGACACAGCATTCATCGGTCATATAGgtttgtatttgccatcttcattccaatggaattgaatgctctattttgcctaaatttaaaaattcagaatgccccgatttttatgagttttcaagcctgttactaaaattttattactacttgccccttcaatatatgatttctgtgtataatccttacag

Basic information

species Vitis vinifera
transcript Vv08s0007g08200.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G21860.1 (Glycine max), 5'ss of exon 2
CTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGACACAGCATTCATCGGTCATATAGgtttgtatttgccatcttcattccaatggaattgaatgctctattttgccta-aatttaaaaattcagaatgccccgatttttatgagttttcaagcctgttactaaaattttattactacttgccccttcaatatatgatttctgtgtataatccttacag
 | ||  | || |||    | ||| |  ||||  |  |  |||||||  ||||||| |||||||||||||||||||| || |||||||| || || |||||||||| ||   ||| ||  |   ||     | || || |  | |   | |   | ||   || | |   |  |    | |||  |  || ||     |  ||   |                                                       
TTAGGCTTGGAAATACTGAATATTTCGCTCCCTACTACGCTGGCTTTGGCAGCAGATCCTATTGCTTCTCTAATTGATACTGCATTCATTGGCCACATAGgtttgtttt---catttttctagaaaactggtagattgatacactaaccttgtgaattgtgaagtaaagctatc----tgtttggggattgtcgtatttcatatgca-------------------------------------------------------

upper sequence: Vv08s0007g08200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G31370.1 (Glycine max), 5'ss of exon 2
CTCGGTCTTGAGATAGCACAGATTGCATTCCCGGCAGCATTGGCTTTAACAGCAGACCCTATTGCTTCTCTAATTGACACAGCATTCATCGGTCATATAGgtttgtatttgccatcttcattccaatggaattgaatgctctattttgcctaaatttaaaaattcagaatgccccgatttttatgagttttcaagcctgttactaaaattttattactacttgccccttcaatatatgatttctgtgtataatccttacag
 | ||  | || |||    | |||||| ||||  |  |  |||||||  ||||||| |||||||||||||||||||| || |||||||| || || |||||||||  ||   ||| ||| ||  ||  |  | || || |  |      ||||  ||   || | |   |  |    | |||  |  || ||     |  ||   | |  ||||                                               
TTAGGCTTGGAAATACTGAATATTGCACTCCCTACTACTCTGGCTTTGGCAGCAGATCCTATTGCTTCTCTAATTGATACTGCATTCATTGGCCACATAGgtttgcttt---cattttctttaaaactgg-tagattgataca------ctaaccttgtgaagtaatgctatc----tgtttggggattgtcgtatttcatatgcacaagttat-----------------------------------------------