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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaaaaacttttatgggctgagtgctgggttttccctcaaaggaggaaagatattttcctgtgcagtgctgaatacatttttattggctaatgttggtgagtttttcag

Basic information

species Vitis vinifera
transcript Vv08s0007g08110.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685332|gb|EE063631.1|EE063631
EST:     ATCCAACTGTACACAGATCCAGAAACATTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|30252575|gb|CB970126.1|CB970126
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|71862495|gb|DT011550.1|DT011550
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|71864165|gb|DT013220.1|DT013220
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|161706024|gb|FC056715.1|FC056715
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|71866396|gb|DT015451.1|DT015451
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|71874295|gb|DT023350.1|DT023350
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|161717359|gb|FC065274.1|FC065274
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|33405255|gb|CF210882.1|CF210882
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|110696361|gb|EE072411.1|EE072411
EST:     ATCCAACTGTACACAGATCCAGAAACATTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|110708022|gb|EE085087.1|EE085087
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|161715416|gb|FC068047.1|FC068047
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
EST: gi|77578022|gb|DV217773.1|DV217773
EST:     ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGG                         GTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC
genomic: ATCCAACTGTACACAGATCCAGAAACGTTTCGCTTAATGGgtaaggtcaa ... agtttttcagGTAAAGAACATGCACTTCTTATATCAAACCACAGAAGTGACATTGATTGGC