1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGATGTACGAAACAAGGAGCAAGTTATTTCCCGAATGAAAGCTGCTGTCGCCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacctgcttatcttttcttgtctgttggtcttttacaaactatttgtcttaatattctgattccatggactgcttttgtattttag
species | Vitis vinifera |
transcript | Vv08s0007g07460.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGAT GCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACCTCAATGTTGATAATEST: gi|71859802|gb|DT008857.1|DT008857
genomic: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacc ... tgtattttagGCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
EST: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGGT GCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTTAATGTTGATAATEST: gi|351014857|gb|FQ438057.1|FQ438057
genomic: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacc ... tgtattttagGCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
EST: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGAT GCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAATEST: gi|110720434|gb|EE096355.1|EE096355
genomic: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacc ... tgtattttagGCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
EST: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGAT GCATGCATTCAAGTGTGCCCAAAGAACC-AGTTAACTTCAATGTTGATAATEST: gi|110701079|gb|EE078296.1|EE078296
genomic: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacc ... tgtattttagGCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
EST: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGAT GCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAATEST: gi|110700665|gb|EE077518.1|EE077518
genomic: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacc ... tgtattttagGCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
EST: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGAT GCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
genomic: CCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacc ... tgtattttagGCATGCATTCAAGTGTGCCCAAAGAACCCAGTTAACTTCAATGTTGATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGTACGAAACAAGGAGCAAGTTATTTCCCGAATGAAAGCTGCTGTCGCCAGCAAGCAATTTGGACAAGAAGACATTTTATGTCCTCTCATCGCAGATgtaattaacctgcttatcttttcttgtctgttggtcttttacaaactatttgtcttaatattctgattccatggactgcttttgtattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT