1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGTGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttattttatcctgttatatacatatgaacttctgttgtttgatcattttcaatgtgctggaaatgcatactaagtcattctatattatctcatat...
species | Vitis vinifera |
transcript | Vv08s0007g06740.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACT GTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAGEST: gi|29785175|gb|CB341931.2|CB341931
genomic: ATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... tcccatgcagGTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAG
EST: TGTNAAATCAAATCCTCAGGAAAGT-GAAAATGCCACATGGATGCTAACT GTGTTCAACTGTTTTEST: gi|30136050|gb|CB921388.1|CB921388
genomic: TGTCAAATCAAATCCTCAGGAA-GTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... tcccatgcagGTGTTCAACTGTTTT
EST: ATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACT GTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAG
genomic: ATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... tcccatgcagGTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttattttatcctgttatatacatatgaacttctgttgtttgatcattttcaatgtgctggaaatgcatactaagtcattctatattatctcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaatg