1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACTCGATAAAATCCCGACGTCCTCCGACAAATACAAGACAGCAGATATCATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGGgtaagtgcatgctaaatccaaaagagcctctgacttgaaaccctacacaacgaaactaagtagcaaggaaaaattgcag
species | Vitis vinifera |
transcript | Vv08s0007g06680.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGG GAAGGACTATTACCAAGAAGGCAGCCATGTTTATGGTGAATTGAATGTAAGEST: gi|71863474|gb|DT012529.1|DT012529
genomic: ATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGGgtaagtgcat ... aaaattgcagGAAGGACTATTACCAAGAAGGCAGCCATGTTTATGGTGAATTGAATGTAAT
EST: ATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGG GAAGGACTATTACCAAGAAGGCAGCCATGTTTATGGTGAATTGAATGTAATEST: gi|71863998|gb|DT013053.1|DT013053
genomic: ATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGGgtaagtgcat ... aaaattgcagGAAGGACTATTACCAAGAAGGCAGCCATGTTTATGGTGAATTGAATGTAAT
EST: ATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGG GAAGGACTATTACCAAGAAGGCAGCCATGTTTATGGTGAATTGAATGTAAT
genomic: ATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGGgtaagtgcat ... aaaattgcagGAAGGACTATTACCAAGAAGGCAGCCATGTTTATGGTGAATTGAATGTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCGATAAAATCCCGACGTCCTCCGACAAATACAAGACAGCAGATATCATCATCTTCAATACAGGACATTGGTGGACTCATGATAAAACTTCCAAAGGgtaagtgcatgctaaatccaaaagagcctctgacttgaaaccctacacaacgaaactaagtagcaaggaaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA