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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g06520.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G17040.1 (Glycine max), 5'ss of exon 3
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||| |||||||| |||||    | |||  ||      || |     || |  ||| |  |  ||||  || ||  | |   ||| | |  ||  | |    |||  || ||  ||||||                                        
ACCAAGCAGCATGAAAATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGgtacatcactt----ggctttgat------aacatatgaatgaa-atttgtgtggttttgtattgt--tgattctggaaactaatcagggaactctat-ttgaagaataagtag--------------------------------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G29160.1 (Glycine max), 5'ss of exon 4
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
 ||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||| |||||||| |||||    | |||| ||      || |     || |  ||| ||    || |    |   || |   ||| |   |     |  |     | ||  | |  |||                                         
ACCAAGTAGCATGAAAATTAAGGTGGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGgtacagcactt----ggcttcaat------aacatatgaatgaa-atttgaggggttctgtgaatagatgattctggaaagtggaaattaatcagggaattctatttgaag-----------------------------------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G32990.2 (Glycine max), 5'ss of exon 3
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
 ||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||||||||  |||||||||||||||| ||||| |||||| ||  | |   | |  |  |   || |   |||||  | |   || ||||   ||     || ||  | ||| |||    || | |   |  | ||| ||                                                 
ACCAAGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCCCTCAGCACCTTCCAACAGgtaaactgcatgactataatt-acatattcctgaagcagttgaattttggaatg--ttaacgcagcaaataacttcggaaattatatttcaataatgagtaaa-------------------------------------------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G30110.1 (Glycine max), 5'ss of exon 4
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaat---cattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
 ||  | ||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||||| ||  |||| ||||||||||| ||||| |||||| ||  | |   | |     |   || |   ||||   | |   ||  |||    ||     | | |||  | ||||| |     | | |   |   |                                                       
ACCGGGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCTATCTTGGCCTCCCTCAGCACCTTCCAACAGgtaaactgcatgactataaattacatatgcctgaagctgttgaattttgaaatgttaatacagtacattaaataacttggtaatttgtatttcaatagca-------------------------------------------------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaa-gcacataacc--attcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
 |||   |||||||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| || ||| |||| || ||||| || ||||| ||||||      | | || | || || |     |        ||||| |  |||   ||  |  |   | | | |     ||   |  || |||| |  | |     |                                                  
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtat----ttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag-------------------------------------------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 5
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcacct-tgggatccgatgtgtggttgc-taagttaaaatataagtccatgacaacaattttgtct-tgtggttgttttgattgcag
 |||   |||||||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| || ||| |||| || ||||| || ||||| ||||||           ||| ||  | || |     |    |||     ||||  |  ||||  || ||  |||  | |  | | |      || | || |  ||  |      | ||  |  |   |||||  ||  | |  ||||| || | ||||
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtaa----------tgtatttgactcgtgtctgagttgcat-----ttcgtgtttttttttat-gtcttcatgtctttgtttcttcaaatgctcgcgtttgtcgaggctgtaatcttt--ctggaatttaatccgtttacttgttgtggt-gcag

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcaca-taaccattcgaatcattttcaat-agtaatc---accttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
 ||    |||||||| || ||||||||||| || ||||||||||||||||| || |||||||||||||||||  |||| ||||||||||| |||||||||||| ||    ||    |  |   ||| |||      |    |||  |||  | |  |||||| | || | ||   |  |  | ||     | | ||||| | | ||    | |  |  |||        || |||  ||  |               
GCCGTCAAGCATGAAGATCAAGGTGGTGGCGCCTCCGGAGAGGAAGTACAGCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaaactgagtttgcatgatattttc-tacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcgg-tgtttgcacatattgttctttctgtggtgcag---------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 3
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
||| ||||||||||| || |||||||| || || ||||||||||||||||| |||||||| ||||| || || |||||||| |||||||| ||||| |||||||  ||   |  | |    | ||  |   |  ||| | |     |     || |||     ||                                                                                       
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATTGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccacaacattcttttgctcgtttttcttatcagc-cttgtttttctttttcgtttctcgcag---------------------------------------------------------------------------------------

upper sequence: Vv08s0007g06520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 3
TCCAAGCAGCATGAAAATTAAGGTGGTGGCACCCCCGGAGAGGAAGTACAGTGTCTGGATCGGAGGCTCCATTCTGGCTTCCCTCAGCACTTTCCAGCAGgtacaccactttcttgtcttccattcatacaaaaagcacataaccattcgaatcattttcaatagtaatcaccttgggatccgatgtgtggttgctaagttaaaatataagtccatgacaacaattttgtcttgtggttgttttgattgcag
||| ||||||||||| || |||||||| || || ||||||||||||||||| |||||||||||||| || || |||||||| |||||||| ||||| |||||||  ||   |  | |    | ||  |   |  ||| | |     |     || ||||    ||                                                                                       
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATCGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccacaacattcttttgctcgtttttcttatcagc-cttgtttttctttttcttttttcgcag---------------------------------------------------------------------------------------