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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACTCAGATATCAGACCTCCAACGCTAAACATTTTCCCCTCTCAGCCTATGCACGTAGAACCACCAATAAAGgtatataactgttatcacacatacttcttttcttgcccttgagttctcagcttttttttttaaggtaaaaatgaaaaatatgggtttgttttgtacttctcag

Basic information

species Vitis vinifera
transcript Vv08s0007g06160.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G29820.1 (Glycine max), 5'ss of exon 1
-------ATAACTCAGATATCAGACCTCCAACGCTAAACATTTTCCCCTCTCAGCCTATGCACGTAGAACCACCA--ATAAAGgt-----atataactgttatca----cacatacttcttttcttgcccttgagttctcagcttttttttttaaggtaaaaatgaaaaatatgggtttgttttgtacttctcag
       || | ||||  || || ||||| || || ||||||||||||||| |||||||||||||||| ||| ||  ||  | ||      | |||   |||||     | || |||     | |||   ||||      |   ||   || |    |     | |  |||| | | |   | | ||  |     
AGAACTCATCA-TCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGgtgtaatcattatcgatatctcacactgtcaattttgtatttgatactatactcttacattctc---tttctgttattaatacgtgctgaatatatagatggt--

upper sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G32710.1 (Glycine max), 5'ss of exon 1
-------ATAACTCAGATATCAGACCTCCAACGCTAAACATTTTCCCCTCTCAGCCTATGCACGTAGAACCACCAATA---AAGgt----atataactgttatc-acacatacttcttttcttgcccttgagttctcagcttttttttttaaggtaaaaatgaaaaatatgggtttgttttgtacttctcag
       || | ||||  || || |||||||| || ||||||||||||||| |||||||||| ||||| ||| ||  |   ||||      | |||   ||||| | |  |    || |   |    ||   |  |      | |  | ||   | | | |      | ||   |  ||| |  | | | | 
AAAACTCATCA-TCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCCTCTAAGCCTATGCATGTAGAGCCATCATCATCCAAGGCCAAGgtgtaatcattatcgatatctcacactgtcaattttattagatagtatataatatgctatactcttacactctctt-tctgttatcatttcgatcgtgtta-