Sequence
atgc intronic sequence ATGC exonic sequenceCTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttgtgagattggctgcaaattataaattaggacagccta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g31830.2 (Oryza sativa), 5'ss of exon 3
CTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttgtgagattggctgcaaattataaatt--aggacagccta
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CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataacaattttgttaggtaggatcgattgctcaaattataaacatgttgttctgcactgctgtaatt--tttaagatcatatcttgcagacttgtcca
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G06780.1 (Glycine max), 5'ss of exon 3
CTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttg--tgagattggctgcaaattataaattaggacagccta
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CTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTGgtaagcaaa-aatgttttttttttttcctgcattagaggcctcactgtagtggttccagctcagattgaactctattttaactctttaatttcataaacct-
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G20970.1 (Glycine max), 5'ss of exon 3
CTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttgtgagattggctgcaaattataaattaggacagccta--------
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CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAGGGAATTATTCTTGgtatgcaa--aatggtttatgtgcatttttttttt-----cctgcattagaggcctcaccgttgtggttccagct-cagattgaactctattttaattctttaatttc
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G03530.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttgtga---gattggctgcaaattataaattaggacagccta
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CTGGACAGGAACGGTTTAGAACACTGACAAGCTCTTACTACAGAGGCGCCCAAGGAATCATTCTCGgta--------acgtccatcatcaatcaatcaatcaaagg-agactaagagatctctctgtctgtaaactgtttagttaatgtttcttggtgaatgcag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110391637|gb|EC956625.1|EC956625EST: CAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTG TATATGATGTGACACGGAGAGAGAGCTTTACAAACTTGTCCGATGTGTGGG
genomic: CAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatc ... tttgttttagTATATGATGTGACACGGAGAGAGAGCTTTACAAACTTGTCCGATGTGTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttgtgagattggctgcaaattataaattaggacagccta
- - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta