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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAAATTGGTAGGCCCGGGTATCGGGTAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgcttttttcctttaatagcgtgactcattttttattaattacaagttattttagtatatttgtttatggtatgctgaagaggaagagatgaaggtgaaatgttttcctggcatctttcttatgtaatgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g04710.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708910|gb|FC060919.1|FC060919
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|110713132|gb|EE088784.1|EE088784
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|30134998|gb|CB920336.1|CB920336
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|110710951|gb|EE087592.1|EE087592
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|161711277|gb|FC060365.1|FC060365
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|30133297|gb|CB918636.1|CB918636
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|110713768|gb|EE089980.1|EE089980
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|110686098|gb|EE063396.1|EE063396
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|156739019|gb|EV243140.1|EV243140
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|161707166|gb|FC055570.1|FC055570
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|71872083|gb|DT021138.1|DT021138
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|71869160|gb|DT018215.1|DT018215
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|110698196|gb|EE075475.1|EE075475
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|161714376|gb|FC063217.1|FC063217
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|71869133|gb|DT018188.1|DT018188
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|294964013|gb|GW836888.1|GW836888
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|27584644|gb|CB007339.1|CB007339
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
EST: gi|161712620|gb|FC061943.1|FC061943
EST:     TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAG                         ATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG
genomic: TAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgctttt ... tgtaatgcagATCGAATATCCTGAGATTGAAGACCTTGCAAAACCTAGGCACCGGTTTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAAAATTGGTAGGCCCGGGTATCGGGTAACAAAGCAATTTGATCCAGAGACAAAGCAGAGGTCTCTTCTCTTCCAGgtgtgcttttttcctttaatagcgtgactcattttttattaattacaagttattttagtatatttgtttatggtatgctgaagaggaagagatgaaggtgaaatgttttcctggcatctttcttatgtaatgcag

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