Sequence
atgc intronic sequence ATGC exonic sequenceGCGTCAGATGCAAGGCCCATTGGACGCAATTTTTGTACCTGTGGGTGGTGGGGGGTTAATAGCTGGTATCGCTGCTTATGTGAAGAGGGTTTCTCCAGAGgtctgtgcttttccatgtaaaaattatgttaactttaaaatctatttggtgtacatatttttaaattatccagattatgttctttcctgttgggaaaata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G21230.1 (Glycine max), 5'ss of exon 3
GCGTCAGATGCAAGGCCCATTGGACGCAATTTTTGTACCTGTGGGTGGTGGGGGGTTAATAGCTGGTATCGCTGCTTATGTGAAGAGGGTTTCTCCAGAGgtctgtgcttttccatgtaaaaattatgttaactttaaaatctatttggtgtacatatttttaaattatccagattatgttctttcctgttgggaaaata---
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CCGCCAAATGCAAGGTCCAATTTATGCAATCTTTGTGCCTGTGGGAGGTGGTGGTCTCATTGCTGGTATTGCTGCTTATGTGAAGAGGGTTAACCCAGAGgtttg--------catg---atgttatgttatcggttgtg---attttgtatgtcttcctttagagaaat--gattattgacat--ctgttatgaatacacag
upper sequence: Vv08s0007g04310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G07340.1 (Glycine max), 5'ss of exon 3
GCGTCAGATGCAAGGCCCATTGGACGCAATTTTTGTACCTGTGGGTGGTGGGGGGTTAATAGCTGGTATCGCTGCTTATGTGAAGAGGGTTTCTCCAGAGgtctgtgcttttccatgtaaaaattatgttaactttaaaatctatttggtgtacatatttttaaattatccagattat-gttctttcctgttgggaaaata---
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CCGCCAAATGCAGGGTCCAATTTTTGCAATCTTTGTGCCTGTGGGAGGAGGTGGTCTCATTGCTGGTATTGCTGCTTATGTGAAGAGGGTTAATCCGGAGgtttgcatgattttatgt--------tattggttgtga------ttttgtatgtct-tccttcatttagagaaatgattattggcttctgttatgaatacatag
upper sequence: Vv08s0007g04310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G10050.1 (Arabidopsis thaliana), 5'ss of exon 3
GCGTCAGATGCAAGGCCCATTGGACGCAATTTTTGTACCTGTGGGTGGTGGGGGGTTAATAGCTGGTATCGCTGCTTATGTGAAGAGGGTTTCTCCAGAGgtctgtgcttttccatgtaaaaattatgttaactttaaaatctatt-tggtgtacatatttttaaattatccagattatgttct---ttcctgttgggaaaata---------------------------------------------
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TCGTCAGGCTAAGGGTCCATTGCATGCTATATTTGTGCCAGTTGGTGGTGGTGGTTTAATAGCTGGTATTGCTGCTTATGTGAAGAGGGTTTCTCCCGAGgt--actctttttgctgtgactgctttggcaatgtcaccttctgttctgttgttgttaataacagctacttgtgacaaaatccagaattttaattaagaaatgagttccttcagcttctgtttcttattgtgacttttgggttatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27585960|gb|CB008655.1|CB008655EST: GTGAAGAGGGTTTCTCCAGAG GTAAAGATTATTGGGGTGGAGCCCTGTGATGCAAATGCAATGGCATTGTCG
genomic: GTGAAGAGGGTTTCTCCAGAGgtctgtgctt ... ttttgtacagGTAAAGATTATTGGGGTGGAGCCCTGTGATGCAAATGCAATGGCATTGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGTCAGATGCAAGGCCCATTGGACGCAATTTTTGTACCTGTGGGTGGTGGGGGGTTAATAGCTGGTATCGCTGCTTATGTGAAGAGGGTTTCTCCAGAGgtctgtgcttttccatgtaaaaattatgttaactttaaaatctatttggtgtacatatttttaaattatccagattatgttctttcctgttgggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaaa