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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACATATCTGTCAATTCGACATCAGAGGATTCGTACCAGGGATGTAGACTGCATTCGGCATTGCTTCAAAACTCTATTGGAAAGCATAAACTCAACTGgtacaccatttttctaccttataatacttggttttttacttcatatctcagttcatgtgtcatttatatatcctatctacaagtgatttgacctaaattt...

Basic information

species Vitis vinifera
transcript Vv08s0007g04290.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859037|gb|DT008092.1|DT008092
EST:     CTGCATTCGGCATTGCTTCAAAACTCTATTGGAAAGCATAAACTCAACTG                         ATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA
genomic: CTGCATTCGGCATTGCTTCAAAACTCTATTGGAAAGCATAAACTCAACTGgtacaccatt ... tgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA
EST: gi|71884355|gb|DT033410.1|DT033410
EST:     AAACTCTATTGGAAAGCATAAACTCAATTG                         ATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA
genomic: AAACTCTATTGGAAAGCATAAACTCAACTGgtacaccatt ... tgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA