Sequence
atgc intronic sequence ATGC exonic sequenceAACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtgatgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G37610.1 (Glycine max), 5'ss of exon 3
---AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtgatgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg----
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TGCTACAGTCAGAAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAA---GGCAGCGTCTTCAGCAGTCAAGTAGGgtaagtga--aaccattgcatcaaaacttgtcctttaaaggtttaaaatgatggattttgatgggaatcagtcaagattggatactg--ttacagaattttttg
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G37600.1 (Glycine max), 5'ss of exon 2
---AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtg--atgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg
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TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAA---GGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgcaattatgtcaaaacttgtcctttaaaggtttgaaatgatgcattttgataggaatcagtcaagattggacagtgatacagaagcttttgtga--
upper sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 3
---AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtgatgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg-----
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TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAA---GGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgaaccattgcatcaaaacttgtccct-ttaag--gtttgaaatgatggattttggtaggaatcagtctagattcgacactg--ttacagaattttttgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718272|gb|FC065687.1|FC065687EST: CAGTCGAGCAGG ACAAAAGGAGCAGCCAATGATGTTACTGGGACCATGGTCAACTCCACTGAG
genomic: CAGTCGAGCAGGgtgagtgatg ... tcggataaagACAAAAGGAGCAGCCAATGATGTTACTGGGACCATGGTCAACTCCACTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtgatgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa