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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcattttccaattcaatttgtttgattttggctttagtagtcattaatggatatgatgcttactccgaactctaagttgtcatatctatttcttc...

Basic information

species Vitis vinifera
transcript Vv08s0007g03250.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA0084S00210.1 (Glycine max), 5'ss of exon 3
GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcattttccaattcaatttgtttgattttggctttagtagtcattaatggatatgatgcttactccgaactctaagttgtcatatctatttcttc---
|  | |   | ||||| ||  ||||| | |||||||| |||||||| || ||||| |||||||||||||| |||||||||||||||     || |   ||  |  |  |||  | |  |  |   || || | |||| |   |  ||  ||   || |    |||  || | |   
GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAGgtacttcattttctttgacagtaatttaaaaat--gctggatttattctctttgcat-tcatgcatgaactaaatacttccttattccttcttcttttcccaa

upper sequence: Vv08s0007g03250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G22160.1 (Glycine max), 5'ss of exon 3
GTTTCAAGGTGAAAGAGACTTCAAAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcattttccaattcaatttgtttgattttggctttagtagtcattaatggatatgatgcttactccgaactctaagttgtcatatctatttcttc-----
|  | |   | ||||| ||  ||||| | |||||||| |||||||| || |||||||||||||||||||| | |||||| ||||||    | |   |  || ||| |    || | | ||||  |||||    || ||| ||     ||     || ||  |        ||      
GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTATTGAGATATATGAATTTGAGACgtactttattttct--ctgacactaatttattct---ctttgcattcatgcatggactaaatacttccttattccttcttcttttcccaaagcaaagttagataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30253288|gb|CB970839.1|CB970839
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|349822639|gb|FQ412903.1|FQ412903
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|30253209|gb|CB970760.1|CB970760
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|351019188|gb|FQ429348.1|FQ429348
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|349829498|gb|FQ420030.1|FQ420030
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|110413628|gb|EC979423.1|EC979423
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|110423056|gb|EC989391.1|EC989391
EST:     ATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: ATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|28959489|gb|CB339745.1|CB339745
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG
EST: gi|71855235|gb|DT004290.1|DT004290
EST:     AAAGTGGGCCCTCGACCAGAGAAGCCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAGG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAGG
EST: gi|349811972|gb|FQ410769.1|FQ410769
EST:     AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAG                         CTGTCCATTTTGTCGGAAG
genomic: AAAGTGGGCCCTCGACCAGAGAAACCAATTGAGATATATGAATTTGAAAGgtacttcatt ... gaaacctcagCTGTCCATTTTGTCGGAAG