Sequence
atgc intronic sequence ATGC exonic sequenceTAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggttatttactgcagaatcaggaacttggtagccttgtggctccattggattacctaccaagtaccacttacaagtgtgtttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 3
TAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggttatttactgcagaatcaggaacttggtagcct-tgtggctccattggattacctaccaagtaccacttacaagtgtgtttc--
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TAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtat-tactatttttttccttttcaaaatcactctcccttttttttctccctatataatttga--gatttatttggtcttggattgttggattcctatttgaa
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 3
TAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggtt---atttactgcagaatcaggaacttggtagccttgtggctccattggattacctaccaagtaccacttacaagtgtgtttc-
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TAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGTGTAGTACCAGATGGCATTGATGTGCACTGCTTGGCAGGTCTCATAAAGgtat-taccatttttcctattcaaaattactcttccttttctttccctatatattttgagatttatttggtcttggatt--gttggattttggtctg-gtctct
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G23620.1 (Glycine max), 5'ss of exon 2
--------------------TAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggttatttactgcagaatcaggaacttggtagccttgtggctccattggattacctaccaagtaccacttacaagtgtgtttc
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GCTGAAGGAATCTTTAGAATTGATGCTGAAAATGGTCAAGAGGAgtttgtgagggaataattaaatagaggtgtagtaccagatggcattgatgtgcactgcttggcaggtctcataaaggtat-tattattttttc------ctact-caaaatca----ctt--ttccttttctttccctatatattttgag--------------------------
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G08610.1 (Glycine max), 5'ss of exon 4
-----------TAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggttatttactgcagaatcaggaacttggtagccttgtggctccattggattacctaccaagtaccacttacaagtgtgtttc
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ATCTTCAGAATTAATGCTGAAAATAGTCAAGAGGAGTTAGTAAGGGAACAATTAAATAGAGGGATTGTACCATATGGCATTGATGTGCACTGCTTAGCAGgtcttataaaggcattatactgttattaaaaaattt-ctttaggatcacttccccc-tccccccctccccccctcaaaatactaattgtttggagattattg---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403330|gb|CF208957.1|CF208957EST: GAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAG GCTTGGTTCAGAGAACTTCCAACTGGATTGTTGGACTCTCTCTCACCAGAG
genomic: GAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttca ... cttcgtgcagGCTTGGTTCAGAGAACTTCCAACTGGATTGTTGGACTCTCTCTCACCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggttatttactgcagaatcaggaacttggtagccttgtggctccattggattacctaccaagtaccacttacaagtgtgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggaac