Sequence
atgc intronic sequence ATGC exonic sequenceCGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G17810.1 (Glycine max), 5'ss of exon 4
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
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CTTGGGAAGTTGGACAGCGTATCTAATCAGTGTCCTCTACATGGAGTACCGTACCAGAAAGGAAAAAGAAAATGTCAGTTTCAAGAACCATGTCATTCAGgt-attctcattctgcc---------accactgcctcctaataatctctttctcacaatgtctaag---gttctaaattgtcttcgtagtttcatggcaa--tcttagatattgc-------
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G42640.1 (Glycine max), 5'ss of exon 3
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
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CTTGGGAAGTTGGACAGCGTATCTAATCAGTGTCCTCTACATGGAGTACCGTACCAGAAAGGAAAAAGAAAATGTCAGTTTCAAGAACCATGTCATTCAGgt--attctcattctgccaaatctatttctcacaatgtctaaggttctaaattgtctaaat--agtttcatcgcaatcttcgatgttgcgagtaattacagata------------------
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G09140.1 (Glycine max), 5'ss of exon 2
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
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TATTGGAAGCTGGACTGCTTATCTAGTCAGTGTCCTCTACATAGAGTACCGCACCAGGAAGGAAAAGGAAAATGTCAGCTTCAAGAACCACGTTATTCAGgttagtatgttgtgttgtgtcgtgttacctt-ctcaactctggatctc---tttctacatagtgttctagttccgataaattatttggtgatgctggattatca------------------
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G28310.1 (Glycine max), 5'ss of exon 3
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttca-ggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttac--caatctccattttaccaaaaaggaaaattccttgttt--ttgaattccag-----------------
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TATTGGAAGCTGGACTGCTTATCTAATCAGTGTTCTCTACATAGAGTACCGCACCAGAAAGGAAAAGGAAAACGTCAACTTCAAAAATCATGTCATCCAGgttgctaagaataacaactaaaatttgtcaataaa--aaaaaatattgttatgttgtgttgtcttctcaattttctttgttttctaatttgataagagaaaaactacagtactagataaaattgcactattctgaatttttcag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ18760 (Selaginella moellendorffii), 5'ss of exon 2
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgtt-agtt-tgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattc----cttgtttttgaattccag-----------------------------------------------------------
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TTTGGGCTCCTGGACTGCCTATCTTATCAGCTGCCTCTATGTCGAGTATCGGGCTCGCAAGGAAAAAGAGAATGTCAACTTCAAGAACCATGTCATCCAGgtagagttatgctaaagtttaaaacttttttcttctttcttttct-tctcttctggctgtttgtgagaaggcttggagagtttagctgtagaactttgagagctccaagacttcttccaaagttcctgtagctagaacttcgagagtttgttctcgctgctaaaagagtgatattttttcttgacag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 2
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatat-ctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattc----cttgtttttgaattccag-----------------------------------------------------------
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TTTGGGCTCCTGGACTGCCTATCTTATCAGCTGCCTCTATGTCGAGTATCGGGCTCGCAAGGAAAAAGAGAATGTCAACTTCAAGAACCATGTCATCCAGgtagagttatgctaa---agtttaaaacttttttctttcttttcttctcttctggctgtttgtgagaaggcttggagagtttagctgtagaactttgagagctccaagacttcttccaaagttcctgtagctagaacgtcgagagtttgttctcgctgctaaaagagtgatatttgttcttgacag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ21839 (Selaginella moellendorffii), 5'ss of exon 2
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
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GCTCGGGGCCTGGACCGCCTATCTCATCAGTTGGCTCTACGTCGAGTACCGCAATCGCAAGGAGAAGGAGAATGTGAGCTTCAAGAACCACATCATCCAGgtaag--------------aagcaagaagcaaagatcg-atctttctccatcttttcca-tcttttcca-tctttggtgttc-ttgagtcgcgagcgatggtttctcttgttgcag------
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 2
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
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GCTCGGGGCCTGGACCGCCTATCTCATCAGCTGGCTCTACGTCGAGTACCGCAATCGCAAGGAGAAGGAGAATGTGAGCTTCAAGAACCACATCATCCAGgtaag--------------aagcaagaagcaaagatcg-atctttctccatcttttccaatct-------ttggtgttcttga----gtcgcgagcgatggtttctcttgttgcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685103|gb|EE063138.1|EE063138EST: GAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAG TGGTTTGAAGTGCTTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGT
genomic: GAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgc ... tgaattccagTGGTTTGAAGTGCTTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTGGGAAGCTGGACAGCCTACCTCATCAGTGTTCTCTACATAGAGTATCGAAGTCGGAAGGAGAAAGAGAATGTTAGCTTCAAGAACCATGTCATACAGgttagtttgcttcaggccaaagcaaaacaaaacgctagcaaatatctccacttgctacaatccaaaccagttaccaatctccattttaccaaaaaggaaaattccttgtttttgaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC