1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAGgtttaataaatatatgcatgcctatacttgactctgaattattgaatctgaaacattattaagaatcgttcctcctcactttggattttatagtttgggg...
species | Vitis vinifera |
transcript | Vv08s0007g01750.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG GCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATTEST: gi|161715758|gb|FC066162.1|FC066162
genomic: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAGgtttaataaa ... ttgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
EST: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAG GCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
genomic: GTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAGgtttaataaa ... ttgttttcagGCTCTCAAAGATCTATATACACATCTGACTCCTATACAGCGTGTGGGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAAGAATGGCAAACGAAACTGGTCTTGACTTCAGTGATCAGATTATCTCATTGGAGAATAAGTATCAACAGgtttaataaatatatgcatgcctatacttgactctgaattattgaatctgaaacattattaagaatcgttcctcctcactttggattttatagtttgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc