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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCACATGTAGTGAGTATTCCATGGAAGCCTATAAGAAATATGGAGTTGTAAAGGGCACCGTCTTGACCACTTGGCGTCTCTGCCGCTGTAATCCCCTTGgtacaatttctactctttttgcaatcttgaataccatacaaaattctgtgctcttttctgacctagttatggtatgttttcggtcttaagagtatatttcacctcatgggcatctgtaaatatgaagccaattatattcttttccag

Basic information

species Vitis vinifera
transcript Vv08s0007g00520.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g00520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g15970.5 (Oryza sativa), 5'ss of exon 3
CCCACATGTAGTGAGTATTCCATGGAAGCCTATAAGAAATATGGAGTTGTAAAGGGCACCGTCTTGACCACTTGGCGTCTCTGCCGCTGTAATCCCCTTGgtacaatttctactctttttgcaatcttgaataccatacaaaattctgtgctcttttctgacctagttatggtatgttttcg-gtcttaaga-gtatatttcacctcatgggcatctgtaaatatgaagccaattatattcttttccag
|| || || |||||||| || ||| |||| || || ||||| || |||| |||||| ||  |||||||  |||||||||| |||||||||||||| |||||||          | |||| |     |||  |      || | |||| |    || |  |||  |||    || ||     |  || ||  |  | ||||  |  || |   ||    |||| |   ||                    
CCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGTAATCCTCTTGgtatg----taggttttttcg-----ttggtt------catagttcttttgatttcttcgac--agtcgcagtctgcacctgcatcatatcatatttattaaatttcttttaca---ataaacaaacag--------------------

upper sequence: Vv08s0007g00520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G819212_T01 (Zea mays), 5'ss of exon 4
CCCACATGTAGTGAGTATTCCATGGAAGCCTATAAGAAATATGGAGTTGTAAAGGGCACCGTCTTGACCACTTGGCGTCTCTGCCGCTGTAATCCCCTTGgtacaatttctactctttttgcaatcttgaataccatacaaaattctgtgctcttttctgacctagttatggtatgttttcggtcttaagagtatatttcacctcatgggcatctgtaaatatgaagccaattatattcttttccag
|| || || |||||||| || ||| | || || ||   |||||| |||||||||||  || |||||||  ||||||| || ||||| |||||||| |||||||     | |  | | | |     |||   || |         |||||     | | |||| |  ||    ||||| |        |    | | |  ||   |||    || |||     | |  ||  |   |||  | | |||
CCAACTTGCAGTGAGTACTCTATGCAGGCGTACAAACGATATGGTGTTGTAAAGGGTTCCATCTTGACTGCTTGGCGCCTTTGCCGTTGTAATCCTCTTGgtatgtagttttttttctctatgtgcttagttatc---------tctgt-----tgtttgacatttttcatatatgtat--------agatctgtgtcacataacattta-atttgtgggacttagacctctctgatttatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189211|gb|CF608560.1|CF608560
EST:     AAAGGGCACCGTCTTGACCACTTGGCGTCTCTGCCGCTGTAATCCCCTTG                         GTGGGTCTGGATTTGACCCTCCACGATGGTTTGATGAGGGGCCTCCACCAG
genomic: AAAGGGCACCGTCTTGACCACTTGGCGTCTCTGCCGCTGTAATCCCCTTGgtacaatttc ... tcttttccagGTGGGTCTGGATTTGACCCTCCACGATGGTTTGATGAGGGGCCTCCACCAG