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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTAATTCGTAAAACAACTGCACTAGGTTCTTCAAACTACATGGAACGTCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaattttatccagctactatgcatggcttattcttcagttctatttctcatgtattattctgtaatttccacattaataaacttttctatattttttt...

Basic information

species Vitis vinifera
transcript Vv08s0007g00290.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721699|gb|FC070464.1|FC070464
EST:     TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG                         ATTTCTTTGACTGGAATAAAGTCAAGCTTCGGTATTGTGATGGTGCTTCTT
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
EST: gi|161709860|gb|FC058920.1|FC058920
EST:     TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG                         ATTTCTTTGACTGGAATAAAGTCAAGCTTCGGTATTGTGATGGTGCTTCTT
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
EST: gi|161714990|gb|FC062719.1|FC062719
EST:     TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG                         ATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT
EST: gi|161714186|gb|FC062931.1|FC062931
EST:     TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTG                         ATTTCTTTGACTGGAATAAAGTCAAGCTTCGGTATTGTGATGGTGCTTCTT
genomic: TCAAGTTCGCTTTTCCGGAATTTTAAGCCATGACTCATCACAGAATCCTGgtaaatttta ... cattctgcagATTTCTTTGACTGGAATAAAGTCAAGCTGCGGTATTGTGATGGTGCTTCTT