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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g00120.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g38550.1 (Oryza sativa), 5'ss of exon 2
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag
 ||||| ||||  |||||||| || ||||  || || |  |||||||| || ||||| |||||||| ||||||||||| || ||||||||||| |||||| | |||  |||   |||   ||   | |   ||||| |||||   |   | |   | | | ||| | |   | | ||               
TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgctattgatct---atgattttgc-tatatcaattttctaacaggg---tttataatgttca--attcttag--------------

upper sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 1
--CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcc----tctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattg--tacctacttcttaaactgcag
   ||||| || |  || ||||| || ||||| |||||||  |||||||| |||||||||||| | || || |||||||| || ||||||||||| |||||| | |||              |||| |   | ||  |  |||| |   | |||  | |||    | ||  |  |    | ||                 
AGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcctcattgtaacttcatgtttctgtaactccatga-tccataattttaacacagcataatattggtcaattgccag---------------

upper sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 3
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcc----tctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattg--tacctacttcttaaactgcag
 ||||| || |  || ||||| || ||||| |||||||  |||||||| |||||||||||| | || || |||||||| || ||||||||||| |||||| | |||              |||| |   | ||  |  |||| |   | |||  | |||    | ||  |  |    | ||                 
TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcctcattgtaacttcatgtttctgtaactccatga-tccataattttaacacagcataatattggtcaattgccag---------------

upper sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag
 ||||| || |  |||||||| || ||||| || ||||  ||||| || ||||| || |||||||| || |||||||| || ||||||||||| |||||| | ||| ||||   |   |  |  || ||| ||  | |  | |   |  |     | |||||    |    ||     |    ||||  |||
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctg----ttttctgacatcatgcataatatttgaggaaacgccag

upper sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G434519_T01 (Zea mays), 5'ss of exon 3
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag----------
 ||||| || |  |||||||| || ||||| || ||||  ||||| || ||||  || |||||||| || |||||||| || ||||||||||| |||||||| ||| ||||   |   |  |  || ||| ||  | | | |    ||       | |||||    |    ||     |    ||||  |||          
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAACCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgttagctttttattagtgaaaattgtatttatttacttca-tctgcagtta---tgttttctgacatcatgcataatatttgagcaaacgccagtctatcctga

upper sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G012052_T01 (Zea mays), 5'ss of exon 3
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatata-tatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag
 ||||| ||||  |||||||| || ||||  || || |  || ||||||||||| || |||||||| || ||||| || || ||||||||||| |||||| | | ||      || |||| | | | | || ||| |||   ||       ||  ||  |  || ||  ||||    | |||| |        
TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAACTATCCCAACAGCCCGCCATCAGTAAGATTTACTTCTGAGATGTGGCATCCGAATGgtaagcatcg-----ctatcatgt-cttgtctactatttga---tcatgccaaagttctgac-aattctttttgttttgaattctcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190149|gb|CF609498.1|CF609498
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCAGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCGCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|71855236|gb|DT004291.1|DT004291
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110406248|gb|EC971815.1|EC971815
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110411536|gb|EC977255.1|EC977255
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110408770|gb|EC974411.1|EC974411
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|71855279|gb|DT004334.1|DT004334
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|161706746|gb|FC055086.1|FC055086
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAAG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110404984|gb|EC970511.1|EC970511
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|161707423|gb|FC057350.1|FC057350
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGT
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGT
EST: gi|110375077|gb|EC940034.1|EC940034
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|37183655|gb|CF603009.1|CF603009
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|161710953|gb|FC058612.1|FC058612
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110409487|gb|EC975150.1|EC975150
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110398671|gb|EC965142.1|EC965142
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
EST: gi|110411501|gb|EC977218.1|EC977218
EST:     CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATG                         TTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG
genomic: CAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttct ... taaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGG