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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCCCTGAATCTGGATGGCTTTGATGAAAATCAAGTTTTGGTTGATAAGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTGgtttgttatttattatcgatcatctttttctgtttctttcctgctcatttgtttgtgtgggcctattggtgggcgaataggcatcaccgacatctgatta...

Basic information

species Vitis vinifera
transcript Vv07s0151g00790.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827480|gb|FQ422348.1|FQ422348
EST:     AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTG                         GAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
genomic: AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTGgtttgttatt ... atttgtgcagGAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
EST: gi|351025295|gb|FQ434308.1|FQ434308
EST:     AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTG                         GAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
genomic: AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTGgtttgttatt ... atttgtgcagGAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
EST: gi|349826552|gb|FQ418643.1|FQ418643
EST:     AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTG                         GAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
genomic: AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTGgtttgttatt ... atttgtgcagGAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
EST: gi|122690606|gb|EC954888.1|EC954888
EST:     AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTG                         GAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA
genomic: AGAAAGCAGCACCAGTTCTTGCTCATTACTGTAGCATCATTACTAGCCTGgtttgttatt ... atttgtgcagGAATTCTCACTGGATGGGCGATTCATTATTAGTGCTGATCGGGATTTTAAA