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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGTTCTCACCTGTGCCTTTGCTGAAGTCCTACTTGAAGGAGGCAAGAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcctaatacagcactatatcaaaatgagatatgctgtttcccagtaattctctcttaaaatttcaaataaagaactatataatttatttataaa...

Basic information

species Vitis vinifera
transcript Vv07s0151g00650.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543121|gb|CF511353.1|CF511353
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110686773|gb|EE064797.1|EE064797
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAAGCTGTGATCTAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110700228|gb|EE078024.1|EE078024
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110374525|gb|EC939343.1|EC939343
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|30256284|gb|CB972127.1|CB972127
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAA                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|34546903|gb|CF515135.1|CF515135
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110397256|gb|EC962986.1|EC962986
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|30253383|gb|CB970934.1|CB970934
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|34544630|gb|CF512862.1|CF512862
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|34546725|gb|CF514957.1|CF514957
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110702624|gb|EE078760.1|EE078760
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110419314|gb|EC985531.1|EC985531
EST:     AAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: AAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110693335|gb|EE069474.1|EE069474
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|110374716|gb|EC939639.1|EC939639
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
EST: gi|34543204|gb|CF511436.1|CF511436
EST:     GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAG                         AATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC
genomic: GAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcct ... tatttttcagAATGAAGTCAATGAACGGGAGTTGACTGCCCTTAAGGCTGTGATCAAGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGCAGTTCTCACCTGTGCCTTTGCTGAAGTCCTACTTGAAGGAGGCAAGAAAAGCTTCATCGCCACTTAAACCTGGAAATGCATCTCCCACTGCACAGgtgtgctcctaatacagcactatatcaaaatgagatatgctgtttcccagtaattctctcttaaaatttcaaataaagaactatataatttatttataaa

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