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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctggggttcttacctttttgtttctgtaatataatgacacaatgccctacttccaaaacggcacccttgactag

Basic information

species Vitis vinifera
transcript Vv07s0151g00550.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g28640.1 (Oryza sativa), 5'ss of exon 3
AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctggggttcttacctttt---tgtttctgtaatata-atgacacaatgccct-acttccaaaacggcacccttgactag-------
||  ||||||||| ||| ||||||  |||| ||||| ||||||||||||||||| || ||||  |||||||||||  | ||||| || || || ||||| || ||||||   | ||    | |||   ||||   | || ||||  | |   |    || | | || | || |        |       | |        
AACATTTGTGGGACGGAAGTGTGTAATCAAAGAGCGGTTTTCAAAGAAGTACCGACACCCATTGTTGGACTCAAAGTTGACTCTTAAACGCTTAAATGCTgtcagtttccataactaacatgctttatttttagatattcctgttttctgtgtagagcatttctctgattttctttgtattagataaatcaaaggctaaa

upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G06300.1 (Glycine max), 5'ss of exon 3
-AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctgggg----ttcttacctttttgtt-----tctgta-atataatgacacaatgccctacttccaaaacggcacccttgactag---------------
     |||||||||||||  | |||||||||||| ||||| |||||||||||| |||||||| ||||||| |||||| | || |||||||| || ||||||||||| ||  | |           || ||   || ||| |     ||| ||  | ||         ||    | |||   || |      || || |                
CTTCTTTTGTGGGAAGGAAATCTGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagatttagaaaaaaaaaatgtttttttttttcttgctgaagctctatatgtttagcagtgttttgttgcatttcttgaatgcattgtttcaccaattggtttttggagca

upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G04930.1 (Glycine max), 5'ss of exon 3
AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctggg--gttcttacctttttgt--ttctgtaatataatgacacaatgccctacttccaaaacggcacccttgactag----------------
    |||||||||||||  |  ||||||||||| || || |||||||||||| |||||||| |||| || |||||| | || |||||||| || |||  |||||| ||  | |        ||| ||  | |  ||    ||| || | |          ||    | |||   || |      || ||  |                
TTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagatttagaaaaaaaaatgtttttgtcctgctgaagctctatattttggcagtgttttgttgcatttcttgaatgctttgtttcacccgttggttttttgtgcag

upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G34690.1 (Glycine max), 5'ss of exon 2
AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctggggttcttacctttttgtttctgtaatataatgacacaatgccctacttccaaaacggcacccttgactag
                || |||||||||||||| | ||| |||||||||||| | |||||| ||||||| || ||||| || |||||||  || || ||||| || ||    |            |   | || ||||   |||||  | |  || || | |  || ||   |       | ||    
----------------AGATGTGTTGTCAAGGAACACTTCTCAAAGAAGTACAGCCATCCAACTTTGGATTCTAAACTGACACTCAAGCACTTAAACGCGgtcagatttaaaaaa----------attgtattctttccccaatat--taaatcattgtctttgtttcac--caattttttggag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71888132|gb|DT037187.1|DT037187
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|26265932|gb|CA816995.1|CA816995
EST:     CGGCATCCCATCTTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTTCAGTA
genomic: CGGCAT-CCATC-TTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|110727233|gb|EE103760.1|EE103760
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|28958875|gb|CB339437.1|CB339437
EST:     CAAGCG-TTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: CAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|27581764|gb|CB004459.1|CB004459
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|28959679|gb|CB339840.1|CB339840
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCG-TTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|26257835|gb|CA808898.1|CA808898
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|71887554|gb|DT036609.1|DT036609
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
EST: gi|26258595|gb|CA809658.1|CA809658
EST:     ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCG                         GAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA
genomic: ACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttct ... ccttgactagGAGGCCAGATGCATGACAAGAGCTAGACGACTAGGAGTAGCAACTCCAGTA