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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGCTTGTTTTCTTCAATCCAATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgttactgtatgcctcatgttattagcaaggttatgattgttaagtgatggcatgtttattttactgcacttcagatagcaatcaggttaaaatc...

Basic information

species Vitis vinifera
transcript Vv07s0130g00230.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g35640.1 (Oryza sativa), 5'ss of exon 3
TCAATGCTTGTTTTCTTCAATCCAATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgttactgtatgcctcatgttattagcaaggttatg--attgttaagtgatggcat-gtttattttactgcact--tcagatagcaatcaggttaaaatc
|||||||||||||||||||||||  | || |||||| ||||||||||| ||||||||||| | |||||||| |||| ||| | |    | |   ||| | ||   | |  |||    ||| | |||| ||   ||   ||   ||    |||   | | ||   ||| | || ||  | 
TCAATGCTTGTTTTCTTCAATCCTGTGAAATTCGGGGTAACATTCACCCTTGGCAATTTGATGGCACTTGGAAGgtctgtttca----aagttccatttaatataccatcttactctattttcaagttattttattacttgcctttggacaccagtaaaatcagaatgatgtaaactt-

upper sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G032314_T01 (Zea mays), 5'ss of exon 3
TCAATGCTTGTTTTCTTCAATCCAATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgttactgtatgcctc--atgttattagcaaggttatgattgttaagtgatggcatgtttattttactgcacttcagatagcaatcaggttaaaatc
||||||||||| |||||||||||| | || || ||| || |||||||| ||||||||||| | || ||||| |||| ||| || ||   ||||    || |  | |       |||  |       || | | || | | |||| ||||  |  |  | |   | |   |||||  
TCAATGCTTGTCTTCTTCAATCCAGTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttgctagctgccaaagatctgttcaattcatatatcttcaccctttgttagaatctatttttttctgccttagattttggttttacagtaaaa--

upper sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G33260.1 (Glycine max), 5'ss of exon 3
TCAATGCTTGTTTTCTTCAATCCAATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgttactgtatgcctcatgttattagcaaggttatgattgttaagtgatggcatgtttattttactgcacttcagatagcaatcaggttaaa--atc--
|| ||||||||||||||||| ||||||||||| | |||| |||||||  |||| ||||||||| ||||||| |||| |||  |  | ||   ||  | | ||||  |  || ||| |   |   |  ||   | || | |||| || | |  | | |   || |  || ||   ||  
TCTATGCTTGTTTTCTTCAAACCAATCAAGTTTGCGATAGCATTCACTCTTGGTAATTTGCTTTCACTTGGAAGgtatgttctgttttacagct-gtataatta-tattgtgatgctgacttccttgtgt--ttttcaatttaatgtattagaaacaaggataaatttgaatggtctc

upper sequence: Vv07s0130g00230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G28470.1 (Glycine max), 5'ss of exon 3
TCAATGCTTGTTTTCTTCAATCCAATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgttactgtatgcctcatgttattagcaaggttatgattgttaagtgatg-gcatgtttattttactgcacttcagatagcaatcaggttaaaatc--
|| ||||||||||||||||| ||||||||||| | |||| |||||||  |||| ||||||||| ||||||| |||| |||  |  | ||   ||   ||||  |    | |  ||| |     ||| |  |||  || ||||   || | |  |||||  |||          ||  
TCTATGCTTGTTTTCTTCAAACCAATCAAGTTTGCGATAGCATTCACTCTTGGTAATTTGCTTTCACTTGGAAGgtatgttctgttttacagctgtagttac-attgtgatgctgacttccttgtgctttgcaatttgatttatttgaattaaagata--aatttaaacggtctcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351049545|gb|FQ429167.1|FQ429167
EST:     ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAG                         CACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
genomic: ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgtta ... tgtatggcagCACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
EST: gi|110399003|gb|EC965487.1|EC965487
EST:     ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAG                         CACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
genomic: ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgtta ... tgtatggcagCACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
EST: gi|33402532|gb|CF208159.1|CF208159
EST:     ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAG                         CACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
genomic: ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgtta ... tgtatggcagCACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
EST: gi|33402509|gb|CF208136.1|CF208136
EST:     ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAG                         CACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC
genomic: ATCAAGTTCGGGATAACATTCACCTTTGGCAATTTGCTTGCACTTGGGAGgtttgtgtta ... tgtatggcagCACAGCATTCCTCATAGGCCCAAAACGGCAAGTGACCATGATGCTTGACCC