1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTAAGCAAGCTTGTGAAAGGAAGACCTCTTGATAATCTGGAGTTCATGCAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaaccatgatttctctttttatgttccatttcattcattctttagatgccccttcatttctttttctcattgggttgttcagaattgtttgaa...
species | Vitis vinifera |
transcript | Vv07s0129g01080.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAG CTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAGEST: gi|34544613|gb|CF512845.1|CF512845
genomic: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaa ... cgatgtttagCTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAG
EST: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAG CTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAGEST: gi|110702076|gb|EE080376.1|EE080376
genomic: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaa ... cgatgtttagCTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAG
EST: CAATGGATGAAGAGATATTGTGACTCGGTTAATGGAGGTCTTTTAAACAG CTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAGEST: gi|33406833|gb|CF212460.1|CF212460
genomic: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaa ... cgatgtttagCTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAG
EST: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAG CTACAATCCTTTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAG
genomic: CAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaa ... cgatgtttagCTACAATCCTCTGGAAAGGAGAGAGGCTTCCAAAGGAGGGAAGGAAGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTAAGCAAGCTTGTGAAAGGAAGACCTCTTGATAATCTGGAGTTCATGCAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaaccatgatttctctttttatgttccatttcattcattctttagatgccccttcatttctttttctcattgggttgttcagaattgtttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG