1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCCCAAGTTATGCATGCACTGGGTTATCCTTTACCTGTAACTGATAGAATTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaatttttttcccttaataaatattaaaggttgtatgcacacttctaacaaaatgtgaaagttgcagatttcatttgaatgtgtgattttaaacaatt...
species | Vitis vinifera |
transcript | Vv07s0129g00400.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|27585053|gb|CB007748.1|CB007748
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|110698639|gb|EE076369.1|EE076369
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|110383936|gb|EC948342.1|EC948342
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|110418474|gb|EC984631.1|EC984631
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|110426484|gb|EC992896.1|EC992896
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|30329717|gb|CD012979.1|CD012979
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: GCAAGGAACATTGAACTTGGACTTGGCGTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|110372164|gb|EC936313.1|EC936313
genomic: GCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|37188352|gb|CF607701.1|CF607701
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGCEST: gi|110401492|gb|EC968102.1|EC968102
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
EST: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAG CTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
genomic: TTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaattttt ... tgacgtacagCTTTGCTTCTTGCACCCTTCGAAACACAAATTTGAGCATCCTCGCTTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCCAAGTTATGCATGCACTGGGTTATCCTTTACCTGTAACTGATAGAATTCCAGATATTACTAAAGCAAGGAACATTGAACTTGGACTTGGCCTACAGgtaaatttttttcccttaataaatattaaaggttgtatgcacacttctaacaaaatgtgaaagttgcagatttcatttgaatgtgtgattttaaacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaacaa