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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgttttagctaatgctttggtccatggatttcaataaatagaactccttttttgtttgatttcaccag

Basic information

species Vitis vinifera
transcript Vv07s0104g01120.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os07g22580.1 (Oryza sativa), 5'ss of exon 4
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaa-atcttgaaaatttcttgttttagctaatgctttggtccatggatttcaataaatagaactccttttttgtttgatttcaccag
||||| | | ||  | |||||||||||||| ||||| |||||||  ||||| ||||||||  ||||| | || ||||| ||||| || |||||||| |||||   | ||   | | | | ||||| ||    |    |||  | || |      | | |  |||   ||  |  ||      |||  ||||    
CTGGGTTGTAGAATTCATGGCTGATGTTGTCGAGGAAGAGGAGTCAAACAAGATGAATGCCCGAAATGTCGCTATGGTCTTTGCACCCAATATGACGCAGgtaatttttcttaccataagaatttttttacgtgatcaattgtatgctgatgcaagtgcgctaagatgagatagttc---acttgcattcag---

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g34840.1 (Oryza sativa), 5'ss of exon 4
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgtt--ttagctaatgctttggt------ccatggatttcaata-aatagaactccttttttgtttgatttcaccag-----------------
 |||||| |||| || |||||||| ||||| || ||||||||| | ||||| |||||||| || || || || ||||| ||||| || || |||||||||||  || |  | |  || || |||   |    | || | || | | |||       ||    ||||  || || |||||     |   ||||| | |                       
TTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGgt-aatctccatttctgtaattttgcaggggatcaggtgatacgtaggtgattcttcagtactttccctacaaaagaacctgactgaggtttgctcttttgtttttgggttctatgctag

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G143253_T01 (Zea mays), 5'ss of exon 4
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgttttagctaatgctttggtccatg-gatttcaataaatagaactccttttttgtttgatttcac-cag
 ||||   |||| || |||||||||||||||||||| |||||||  || || |||||||| |||||| |||| ||||||||||| ||||||||||| |||||  || |      |   || |    |     | |     | ||| |   || ||      |    | ||   | |     |||   | ||  |||
TTGGGTCGTTGAGCTCATGGCTGATGTTGTTGAGGAAGAGGAGTCGAATAAGATGAATGCAAGAAATGTTGCCATGGTTTTTGCACCAAATATGACACAGgt--atttccttcttgccaagtcctctaacacatcgtcgaccttgtttgctgtgacacttgtgctaacaagaacatcgaaattttcctccatacag

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgt-tg---------atattaaatcttgaaaatttcttgttttagctaatgctttggtc-catggatttcaataaatagaactccttttttgtttgatttcaccag
||||||||||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||         | |||  || || ||| | ||    |||   ||||| | |  |   ||   ||    |  ||   |    |||||| ||  |         
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga-----

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G17070.1 (Glycine max), 5'ss of exon 3
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgt-tgatattaaatcttgaaaatttcttgttttagcta--atgctttggtccatggatttcaataaatagaactccttttttgtttgatttcaccag---
||||||||||||||| |||||||||||||| || ||||||||  | |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |  |   | |   |  | ||||  ||||     ||  ||  |||| ||||||   ||| ||   ||    |  |||||| |||  | | |  |    
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAACTTAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCACCAAACATGACTCAGgtatcctcacatactgtacacattttctgttaatattagtatagtttgctccatgttcttctatttgtatttgttgtttttttttttttgtaaaaatact

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G36630.1 (Glycine max), 5'ss of exon 3
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgt---tgatattaaatcttgaaaatttcttgttttagctaatgctttggtccatggatttcaa--taaatagaactccttttttgtttgatttcaccag-------------------------------------------------------------------
||||||||||||||| ||| |||||||||| |  || || || |  ||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||   | | ||  |  ||| |  |  || | |||||  ||    | |      |  | |   |  |   ||    |     || |  ||  ||||   |                                                                   
CTGGGCTATTGATCTCATGTCTGATGTTGTAGCAGAAGAAGATTATAACAAAATGGATGCAAGAAACATTGCTATGGTTTTTGCTCCAAATATGACTCAGgtatgttacatgtatgcttaatgagctcatattttaattatacatgtaacatctttactatgacgttgttacttgttaccattagcatgtattcatatgatgataactatgcaaactggaaatctagtattttttattcacatattttatttttctcttgaaacag

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G03100.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgttttagctaatgctttggtccatggatttcaataaatagaactccttttttgtttgatttcaccag
 |||||| ||||||||||||||||||||||||| || || ||||  |||||||||||||| || ||||| || |||||||||||||| ||||||||||||||  | |  || |     ||  ||  |    |   ||| |  |   |   | | |   || |  |   | || |   || | | | |  |    
TTGGGCTGTTGATCTTATGGCTGATGTTGTTGAAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATATGACTCAGgtaaaaacaaagtt----aacctttgttcaatgaataa-gaatcactgagtagttactaacatttg--attcttgcattctctaactgtag---

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgttttagctaatgctttggt-ccatggatttcaataaatagaactccttttttgtttgatttcaccag--------------------------------------
||||||| |  || | ||||||||||| ||  | || || |   ||||||| ||||| ||  | |||||||||||||| |||||||| ||||||||||||||   |     |||||  |  |  |   |    |||    |||   | ||||  |      |   |  |         |  |||     | | |                                       
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtc----atcttcgacctcccccttggatgctggcacttgaataccatttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S1_829V6.2 (Physcomitrella patens), 5'ss of exon 5
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatattaaatcttgaaaatttcttgttt-tagctaatgcttt--ggtccatggatttcaat----aaatagaactccttttttgtttgatttcaccag-----------------------------------------------------------------------
|||||| ||| |  | ||||| ||||| || |||  ||||   |||||||| ||||||||  | |||||||||||||| || ||||| |||||||| |||||    |  |  |||  |    |   | | | |||    || | |  ||   ||||   ||  |    | || | |   |    ||| ||    | |   |                                                                       
CTGGGCCATTAACTTGATGGCCGATGTCGTGGAGCTGGAGTCTTTCAACAAGATGAATGCTCGCAATATTGCAATGGTATTCGCTCCTAATATGACACAGgtatggagcacttctgcagtggtctctatctgtagaagctgttgtatggcgaatggtcctcttttttcacatggtaactcaagattgcttatcctaaaaggtggttttccgttagcatgttatgtgtcaatgaaggttatccctttactgattcatatttactgccctgcag

upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgt---tgatatta----aatcttgaaaatttcttgttttagctaatgctttggtccatggatttcaataaatagaactccttttttgtttgatttcaccag---------------------------------------------------------------------------------------
||||||| |  | || ||||| |||||||| ||| | ||||   ||||||||||||||||  |||||||||||||||| ||||| || || ||||| |||||   |||| |      |||  ||    |  |     ||   | |  ||||  |     || ||  | | ||      |  |  ||    || |   | |                                                                                        
CTGGGCTGTCAACCTGATGGCCGATGTTGTCGAGCACGAGGTTCTCAACAAAATGAATGCACGAAATATTGCAATGGTGTTTGCACCTAACATGACGCAGgtatgtgatgtcgctgcaattgtgcgcctccccaaacttg--tgacacttttcttaccagacttgtagagattcggtcctgtagttagcagactctccgactagatttctacgtgatctaaggaagtatttgtgttaagcttgttatatgaagtgaataacatattaactatgattcattacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248627|gb|CD714446.1|CD714446
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|32272070|gb|CD721229.1|CD721229
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|32268340|gb|CD717499.1|CD717499
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|32248076|gb|CD713895.1|CD713895
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|32247815|gb|CD713634.1|CD713634
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|110700193|gb|EE077949.1|EE077949
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|32271575|gb|CD720734.1|CD720734
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
EST: gi|32270904|gb|CD720063.1|CD720063
EST:     AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAG                         ATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG
genomic: AAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgttgatatta ... atttcaccagATGTCTGATCCATTGACCGCTCTGATGCATGCTGTTCAAGTGATGAACTTG