1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACTGTGGATGATGATAACTTCATAGATGATACTGGTGTTGACCCTGCTGACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgtcatccccatttgaactttacatttgatatcattttttgccaaatgaacatttggttgactagaatgaggactccaatttcatgattagtg...
species | Vitis vinifera |
transcript | Vv07s0104g00230.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAG GCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGTEST: gi|37189973|gb|CF609322.1|CF609322
genomic: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgt ... attttgatagGCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGT
EST: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAG GCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGTEST: gi|30304544|gb|CB981338.1|CB981338
genomic: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgt ... attttgatagGCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGT
EST: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAG GCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGTEST: gi|32270319|gb|CD719478.1|CD719478
genomic: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgt ... attttgatagGCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGT
EST: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAG GCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGTEST: gi|110685214|gb|EE063377.1|EE063377
genomic: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgt ... attttgatagGCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGT
EST: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAN GCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGT
genomic: ACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgt ... attttgatagGCGGAAGAGGGTGAAGAGGATGAGGAAATTAAGCAGCTCTTCAAGATGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGTGGATGATGATAACTTCATAGATGATACTGGTGTTGACCCTGCTGACCGATATGGAAGTGACCGTGAAGCACGTTCCCCTGGTGATGCTCCTCAGgttaggatgtcatccccatttgaactttacatttgatatcattttttgccaaatgaacatttggttgactagaatgaggactccaatttcatgattagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa