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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAGATCACTTAAGACATTGTTGGATTGGGTTACTAGCCATGTAAATATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgccttattgctttattatttaattctttgtagccttgttaatacttccaattttgtccatttaataatttgtcactggttttggtcttggcttttg...

Basic information

species Vitis vinifera
transcript Vv07s0104g00120.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G33730.1 (Glycine max), 5'ss of exon 3
ACAAGAGATCACTTAAGACATTGTTGGATTGGGTTACTAGCCATGTAAATATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgccttattgctttattatttaattctttg---tagccttgttaatacttccaattttgtccatttaataatttgtcactggttttggtcttggcttttg---
 ||  | |||| |  ||||| |  | |||||| |||| |   | ||||| || |   | ||  | ||| | || ||||| ||||||||||| |||||||||||||||| |   ||||   | | | ||   ||   | |  |  ||| |   || || |||||      | ||||||    ||  |  ||  ||  | |   |   
TCAGAAAATCAATAGAGACAGTAGTTGATTGGATTACCAATGAAGTAAACATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaa--actttgaaactgacttacctgcccttgtatctttatttgctcaaaatttgtttgccca-taatttt---ctaatcgtgaactcagttacagtgc

upper sequence: Vv07s0104g00120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G30910.1 (Glycine max), 5'ss of exon 3
ACAAGAGATCACTTAAGACATTGTTGGATTGGGTTACTAGCCATGTAAATATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgccttattgctttattatttaattctttgtagccttgttaatacttcc---aattttgtccatttaataatttgtcactggttttggtcttggcttttg---
 ||  | |||| |  ||||| |  | ||||||||| | |   | ||||| || |   | ||  | ||| | || ||||| ||||||||||| |||||||||||||||| |   ||||   | |   ||   ||||    | |   || || |   || |||||      |||||||| | | ||||   |  ||  | |   |   
TCAGAAAATCAATAGAGACAGTAGTTGATTGGGTTGCCAATGAAGTAAACATAAACAAAACTTATGTCATTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaa--actttcaaactggcttacctgtacttgtatctttatttgctcaaaatttgtttgcc-aataattttttaatggt---gaactcagttacagtgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719506|gb|EE094693.1|EE094693
EST:     ATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAG                         AGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGA
genomic: ATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgcctta ... aattcaacagAGGGGGTGACTGGAAGAGTGGTGGTAGCTGTCACTTGGAGACGCTCCCTGA