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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGGCCACTGATGCGGGTAGATTGAGAGCAGAATACAACAGGCTTGTTGAGGGTTTGGCCCAGAGGGGAAACTTACCTAgtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgactaaagttggacatgcttctttttcgcag

Basic information

species Vitis vinifera
transcript Vv07s0104g00060.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 2
GTTCAAGGCCACTGATGCGGGTAGATTGAGAGCAGAATACAACAGGCTTGTTGAGGGTTTGGCCCAGAGGGGAAACTTACCTAgtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaa-----tgcacaatctattgactaaagttggacatgcttcttttt-cgcag
||||||||||||||||||   |||  |  | || |||||||||||||| ||||| || ||||| |||||||||||| | || ||| |||   ||   || |     |  |||  |     || ||    |   |  |||       ||    |  || |   | | | |  | ||  ||||| ||  | ||
GTTCAAGGCCACTGATGCCAATAGGCTTCGTGCTGAATACAACAGGCTGGTTGATGGATTGGCACAGAGGGGAAACCTGCCAAgtgagtaccattttttctttcactaattctgtgtcttagactgctcattgtggttggtctttctgggtcagttaatagtttacgataaa-atatttcttgttatgtag

upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 3
GTTCAAGGCCACTGATGCGGGTAGATTGAGAGCAGAATACAACAGGCTTGTTGAGGGTTTGGCCCAGAGGGGAAACTTACCTAgtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgacta--aagttggacatgcttctttttcgcag
|||||||||||||||||| |||||| |  | || |||||||||||||||||||| |||||||| |  || ||| || | ||| ||| || | |||    | |||     ||  ||  ||| |||| ||     || || ||||     |||  | |  |  || |   || |  ||  ||| || ||
GTTCAAGGCCACTGATGCAGGTAGACTCCGTGCTGAATACAACAGGCTTGTTGAAGGTTTGGCACTAAGAGGAGACCTGCCTGgtatgtaggatg----agagt-----tttgttcttaatgtcttaa-----ttcttaaatgttacctctggtcatcactaactaaaacttcttttctttacgtag

upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 3
GTTCAAGGCCACTGATGCGGGTAGATTGAGAGCAGAATACAACAGGCTTGTTGAGGGTTTGGCCCAGAGGGGAAACTTACCTAgtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgacta--aagttggacatgcttctttttcgcag
|||||||||||||||||| |||||| |  | || ||||||||||||||||| || |||||||| |  || ||| || | ||| ||| || | ||| |    |||     ||  ||  ||| |||| ||     || || ||||     |||  | |  |  || |   |  |  ||  ||| |  ||
GTTCAAGGCCACTGATGCAGGTAGACTCCGTGCTGAATACAACAGGCTTGTCGAAGGTTTGGCACTAAGAGGAGACCTGCCTGgtatgtaggatgtc----agt-----tttgttgttaatgtcttaa-----ttcttaaatgttgcctctggtcatcactaactaaaatttcttttctttacatag

upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTCAAGGCCACTGATGCGGGTAGATTGAGAGCAGAATACAACAGGCTTGTTGAGGGTTTGGCCCAGAGGGGAAACTTACCTAgtaagtggaatgccttatagtgatggttcattaataaagtctaaaaacattttttgaatgcacaatctattgactaaagttggacatgcttctttttcgcag
||||||||| |||||||| || |||||| |||| ||||||||| |||| ||||||||||| || | ||| ||  ||||| || ||||||    ||  | |    | || |   | | |  | |  ||  |||   |     | |  | |||||  |||  |       ||  || ||||| ||||
GTTCAAGGCTACTGATGCAGGAAGATTGCGAGCTGAATACAACCGGCTGGTTGAGGGTTTAGCACTGAGAGGGGACTTATCTGgtaagtatg-tgt-tcaggaaggtgatctgtgatttgattgaaagcacacagtaaattttctaattctatgaacttgacgcaacaat--tttttttttgcag