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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAGgtatttaaatctagcatattagataattaatatttggtgcttctttatttcttaatgtgatgatgaatatgagtatatccacttttttaccactacatctag

Basic information

species Vitis vinifera
transcript Vv07s0031g03050.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G003157_T01 (Zea mays), 5'ss of exon 3
GCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAGgtatttaaatctagcatatt-agataattaatatttggtgcttctttatttcttaatgtgatgatgaatatgagtatatccacttttttaccact---acatctag
|||||||| ||||| || ||  |  | ||||| || || ||||||||| |||||||||| ||||||||||| || ||||| || ||||||| ||    | || | || | |  | |   |    | |    |||| | |||     |  |   |  |||| |   |||  ||  || | | |   | || || 
GCAGCTCGGATGCGCTACGTCATGAATAATGAGCCTTACTGCCTGAATTTAATTGATACACCAGGGCATGTTGATTTCTCGTACGAGgtatgtag---tcgcttgttcataccactctcagacagagaagttttactgctt--ccaggaggcaatgatgattgcttcccattaattgctaattggagattta-

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 3
GCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAGgtatttaaatctagcatattagataattaatatttggtgcttctttatttcttaatgtgatg-atgaatatgagtatatccacttttttaccactacatctag
|||||| ||||||||||||| |||||||||||||| |||||| |||||||||| |||||||| |||||||| |||||||| ||||||||||  || | |||  |  || |||  |  |  ||  |      ||||||   |   || |   |   |  |  | || |     |  ||| |  | || || 
GCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTTGACTTCTCGTATGAGgtatgcaa-tgtag--ttatacatatatgcttctttatctcctattattttgcagcatgttttgtcgtttcgtttctaacttaggtgctacaatcagatgtaa

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 3
GCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAGgtatttaaatctagcatat-tagataattaatatttggtgcttctttatttcttaatgtgatgatgaatatgagtatatccacttttttaccactacatctag
|||||  ||||||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||||| |||||||| |||||||||| |||       |||   | ||  ||| | ||   ||||| | |   |||| || || | ||   |   || || |    |  |||  || | | ||  |
GCAGCCAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGACACTCCAGGGCATGTTGACTTCTCGTATGAGgtatgtaatgtagttatacacatatgcttactgttatatgcttatatgcctctttatctgct-atattttgcagcattttttgtcgttt--catttcttcctg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46917805|gb|CN547134.1|CN547134
EST:     ATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAG                         GTTTCTCGTTCTCTCGCTGCATGGGAAG
genomic: ATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAGgtatttaaat ... ctacatctagGTTTCTCGTTCTCTCGCTGCATGTGAAG