Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgtttataccatttacttgctttggttattgagtttagatgtcggatttgtttattatgtttctaatatagtgcctacttatttcattttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 4
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgtttataccatttacttgctttggttattgagtttagatgtcggatttgtttattatgtttctaatatagtgcctacttatt-tca---ttttccag
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GGAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCACAACTTGGACCGCTACTTTGATAAgtaaaattcactttgagcccttgcaac--ctatagagacaaagattttagggtattaaaaat-----taactcagcgcttttatgccatcaaactctttcag
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgt---ttatac-catttacttgctttggttattgagttt----agatgtcggattt--gtttattatgtttctaatatagtgcctactt-atttcattttccag
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GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgt---ttatac-catttacttgctttggttattgagttt----agatgtcggattt--gtttattatgtttctaatatagtgcctactt-atttcattttccag
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GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 3
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgtttataccatttacttgctttggtta--------ttgagtttagatgtcggatttg---tttattatgtttctaatatagtgcctacttatttcattttccag
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GCAGGAGTTGAAAGTTTTTTCTGATGAGGTGATTCGTTTTGGAAATCGTTCAAAGAATCCTCAGTGGCACAACTTAGAGCGTTACTTTGAGAAgtaatataaattgtactcactcaattcaactagcctttcattcatcttctaaaaaatatttagcctttcttatatttattctgagctgtactttcattttaaattttag
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 2
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgtttataccatttacttgctttggtta---ttgagtttagatgtcggatttg-tttattatgtttctaatatagtgcctactt--atttcattttccag
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GCAGGAGTTGAATGTTTTTTCTGATGAGGTGATTCGTTTTGGAAATCGTTCAAAGAATCCTCAGTGGCACAACCTAGACCGTTACTTTGAGAAgtaatataaattgtactcactcaattcaactaacctttcattcatcttcaaaaaaagatttaacttatatttattctgatctgtacttgcattgtaaattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718502|gb|FC069286.1|FC069286EST: AATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAA ACACAGCAGAAGTCTTACTTTTCAGAAGCGGTTGGAGGAAGAAGCAGATAC
genomic: AATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgttta ... cattttccagACACAGCAGAAGTCTTACTTTTCAGAAGCGGTTGGAGGAAGAAGCAGATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgtttataccatttacttgctttggttattgagtttagatgtcggatttgtttattatgtttctaatatagtgcctacttatttcattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC