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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaatttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatgtatgccaatggatag

Basic information

species Vitis vinifera
transcript Vv07s0031g02960.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G33020.1 (Glycine max), 5'ss of exon 3
TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaat--ttatttc---ttgatg--atttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatgta-tgccaatggatag-
||||||||||||| || || ||||||||||| ||  ||| ||||||||||   ||||| || || || ||||| |||||||||||||||||||||||  |||||||   || ||   ||  |   |    |   | |||    |  | ||||    |   ||     | || |||| ||    || |  | 
TGATTGTTGGAGAGATTGCTAATTTTGTAGCCTACATTTATGCCCCTGCTGTTCTTGTTACTCCACTCGGTGCTTTGAGCATTATTGTTAGgtaaatatttatttccattttatactatactaaatactatagctgtttccatttcatgttttagtccctatacagtttctttgtagtgattttgtactgc

upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G38380.1 (Glycine max), 5'ss of exon 3
TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaatttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatg--tatgccaatggatag
||||||| ||||| ||||| |||||||| || || |||| |||||| ||   |||||| ||||| |||||||| ||||| |||||||||||||||| | |     | ||| ||||  | ||||||||| | || | |     ||||||  |   |   |||  | ||  | ||  ||||| |||
TGATTGTCGGAGAGATAGCGAATTTTGTGGCGTACGTTTATGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTgttaggtaaaataaaacgcttatggttttattattcttttttttataatatt----tttctactaaattaactgttttgtgactctggaaatggttag

upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G16670.1 (Glycine max), 5'ss of exon 3
TGATTGTTGGAGAAATAGCCAATTTTGTAGCTTATGTTTTTGCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaat-ttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatgtatgccaatggatag
||||||| ||||| ||||| ||||| || || || |||| |||||| ||   |||||| ||||| |||||||| ||||| ||||||||||||||| |   | || || ||  ||||| |||  | || | ||| | |||||      ||||      ||| |  |   | ||  ||||| |||
TGATTGTCGGAGAGATAGCGAATTTCGTGGCGTACGTTTATGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTGTTAGgtaattgccaattttttattctttttttttaatattatttttctactaaa-----ttaac------tgttttgtgaatctggaaatggctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718353|gb|FC065012.1|FC065012
EST:     GCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAG                         TGCTGTTTTAGCGCACTTTTTGTTGAATGAGAAACTACAGAAAATGGGGAT
genomic: GCCCCTGCTACGCTTGTAACGCCTCTTGGTGCATTGAGCATTATTGTTAGgtaaatttat ... caatggatagTGCTGTTTTAGCGCACTTTTTGTTGAATGAGAAACTACAGAAAATGGGGAT
EST: gi|294965011|gb|GW838814.1|GW838814
EST:     CCCCTGCTACGCTTGTAACGCCTCTTGGATGCATTGAGCATTATTGTTAG                         TGCTGTTTTGGCGCACTATTTGTTGAATGAGAAACTACAGAAAATGGGGAT
genomic: CCCCTGCTACGCTTGTAACGCCTCTTGG-TGCATTGAGCATTATTGTTAGgtaaatttat ... caatggatagTGCTGTTTTAGCGCACTTTTTGTTGAATGAGAAACTACAGAAAATGGGGAT