1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGCCCAGAGTGTGCATACTAGGTGGCGGCTTTGGAGGTTTATATACGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatgttaagtcataatttggattctttttcttttcttttcctttttggaatctgtttcattttcctttagggtggtgcttatcttttccaaaga...
species | Vitis vinifera |
transcript | Vv07s0031g02690.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAG GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATEST: gi|71865150|gb|DT014205.1|DT014205
genomic: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatg ... gtgggaccagGTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
EST: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAG GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATEST: gi|71862339|gb|DT011394.1|DT011394
genomic: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatg ... gtgggaccagGTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
EST: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAG GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATEST: gi|71862681|gb|DT011736.1|DT011736
genomic: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatg ... gtgggaccagGTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
EST: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAG GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATEST: gi|71855322|gb|DT004377.1|DT004377
genomic: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatg ... gtgggaccagGTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
EST: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAG GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATEST: gi|71863748|gb|DT012803.1|DT012803
genomic: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatg ... gtgggaccagGTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
EST: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAG GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
genomic: CGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatg ... gtgggaccagGTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCCAGAGTGTGCATACTAGGTGGCGGCTTTGGAGGTTTATATACGGCCTTAAGGCTAGAATCCCTTGTATGGCCAGAGGACAAGAAACCTCAGgtaggtcatgttaagtcataatttggattctttttcttttcttttcctttttggaatctgtttcattttcctttagggtggtgcttatcttttccaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA