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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag

Basic information

species Vitis vinifera
transcript Vv07s0031g01860.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
  ||||| || | || ||  | |  |||||  | ||| | || |||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| ||    ||    | ||      | | |  | |  ||   | | | |||     |   | |  | |  | ||  ||| |||||              
CTTACCAATACCAGATCTGATTAAGTTTGTGATCTTTTCGAACTTGTCAATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGATTTTATCAGgttagcaaaggaccgttctagtagctagattccatcatggctttaaactttcaactac--taaacaatcctttttcttcccttcag-------------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
| ||||| |  | || ||  | | ||| || || |||||||| || ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||||||       |||||  | | | |||   |   |||| |    |||   ||    |  | |  |||   ||  ||   | || |    |||         
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgt-------gggaagag-taattttaaat---ccttctatattcaatgttagaatggagggcacatactaattttcgtttcatgcctcttcag------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatatttt----ttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
  ||||| |  | || ||  | | ||||||  | ||| | || ||||| |||||||||||||| ||||| || ||||||||||||||||| || |||||||| ||    ||    | |||     |   |  | |  ||   |   | |||    |||  |||| || |   |   ||  |||||||||              
CTTACCACTGCCAGATCTGATTAAATTTGTGATCTTTTCGAACTTGTCGATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGGTTTTATCAGgttagcaaaggatggttctgctagctaaattccatcatggctttgaactttcaagtttcaaaagctaaagaatccttttgttctcttcag-------------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
  |||||||  | || ||  | | |||||| || ||||||||  | ||||||||||| ||||| || ||||| |||||||||||||| |||||||| ||||| |     |  |     |   ||  ||||| | ||| |   |   ||   | | | || || |   | |||   |||                     
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaactaagtcctttaatgttcacttttagaattgg-atgcatatactaatttgctcctcatgcctttttcag-----------------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttt-tcaaagttacaagttatgttctttctcttcaaactttgatgtcag
| ||||| || | || ||  | |  ||||  || ||||||||  |||| || || ||||||||||| ||||| |||||||||||||| |||||||||||||| ||     | ||||  ||   || | |     | |||   | | |  | | |   || | |     |  ||  ||||                     
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggc-agaaact-ttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcag-----------------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G071378_T02 (Zea mays), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
  ||||  || | || ||  | | ||||||  | ||| | || |||||||||||||| ||||| ||||| || ||||||||||||||||| || ||||||||  ||     ||| |  | | |   || | |  | |    |    | || ||  |||    |    || | |||  |  ||                 
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTGGGCTTTTATCAGgttggt-----gaaatttttagtagctgctataatatgcaaccttaaattgttaacaactgaattcattctattcccttgctcag--------------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
  ||||  || | || ||  | | ||||||  | ||| | || |||||||||||||| ||||| ||||| || |||||||||||||| || || ||||||||  ||     ||      || |||||  |  |   |   | | ||      ||  |  ||||  |  ||| ||| || | |||   | ||| |  |||
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTTGGCTTTTATCAGgttggt-----ga------gattttttagtagctgcta--tattatgcgaccttgaatcgttaacatctatattcattttattc---ccttgct--cag

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgt-cagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgttctttctcttcaaactttgatgtcag
||||||  || |||| ||  | | ||| |  || ||||| ||  |||| |||||||| ||||| || || || |||||||||||||| |||||||||||||| |||     | |||| | ||  || | |     | | |   | | | || | | |    | ||    | |||  |  || ||  |             
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagac--agaaacttc-gatattctataagtatatcggaattaaacttgtatac----tgacgctgtctgtcttgcctttttcag------------

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgtt--ctttctcttcaaactttgatgtcag
||| ||| |||||||  |  | | |||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| | |||  ||   |    |   | |    |  |    |     |||  |       || ||  | ||||  |   | |  ||| |||      ||||||
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttaca-agttatgttctttct--cttcaaactttgatgtcag
||| |||||||||||  |  | | |||||| || ||||||||||| || |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| | |||  ||   |    |   | |    |  |    |     |||  |     |||| || | | ||||  |  ||||  ||| ||| |    ||||||
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G31940.1 (Glycine max), 5'ss of exon 4
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttt--tttcaaagttaca-agttatg----ttctttctcttcaaactttgatgtcag
 || ||  || |||| ||  | | |||||| || ||||||||||| || ||||| || |||||||||||||| |||||||| ||||| || ||||||||||| |  |        | |  | ||||||      |     | | | | |     |  ||||| ||   | ||||     ||| ||||||| |||     |  ||||
CCTTCCCTTACCTGATCTCATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgt-aactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcag

upper sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G15250.1 (Glycine max), 5'ss of exon 2
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactt---tttgttctccttttgctctcatatttttttt--caaagttaca-agttatg----ttctttctcttcaaactttgatgtcag
 || ||  || |||| ||| | | |||||| || ||||||||||| || ||||| || ||||| |||||||| |||||||||||||| || ||||||||||| |    |      |  |   ||   ||||      |   | | | | | |     |  ||||| ||   | ||||     ||| |||  || |||     |  ||||
CCTTCCCTTACCTGATCTTATCAAATTTGTCTTATTTGCAAATTTCTCTATTGTCGGCATGAATGTGAGTTTGATGTGGAACTCTGTCGGTTTCTATCAGgtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110714356|gb|EE091173.1|EE091173
EST:     AATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAG                         ATCGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTTGAAGTTGTGTTG
genomic: AATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttg ... ttgatgtcagATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG
EST: gi|34544353|gb|CF512585.1|CF512585
EST:     TCGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAG                         ATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG
genomic: TTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttg ... ttgatgtcagATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG
EST: gi|71886650|gb|DT035705.1|DT035705
EST:     GTGGAACTCTGTGGGATTCTATCAG                         ATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG
genomic: GTGGAACTCTGTGGGATTCTATCAGgtcagttttg ... ttgatgtcagATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG
EST: gi|110721721|gb|EE099039.1|EE099039
EST:     TTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAG                         ATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG
genomic: TTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttg ... ttgatgtcagATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTG