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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatctttccattgtgatttatatatcttaaggaatttttaagttgtctgatatttttttatgttttacag

Basic information

species Vitis vinifera
transcript Vv07s0031g01620.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G39690.1 (Glycine max), 5'ss of exon 3
TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatctttcca---ttgtgatttatatatcttaaggaatttttaagttgtctgatattt--ttttatgttttacag--------------------
|||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || || || |||||||| || || || || ||||||||||| || |    |||||    | | |||||| | | ||  |   |||      | | ||| | |   ||| || |  |  ||                    
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggcctatcatttatttcttttctgtg-tttgggtcctttttgaaagtgaatttgatttaatgtagtcagaggaagtgcaaccttt

upper sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 3
TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatctttcca----ttgtgatttatat----atcttaaggaatttttaagttgtctgatattt-ttttatgttttacag---------------
|||||||||||||||||| ||||||||||||||||| || || ||||||||||| || || || || || || ||||| || || || || ||||||||||| || |    |||||    || | | ||   |    || |||    ||| || |  | ||   ||||| |||| ||| ||   |               
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggtgttataaatttccttctaatgttagtatattattgacctatcatctatttcttttctgtgtttgggtccttttggaaagtg

upper sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G39520.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaa---atctttcc----attgtgatttatatatcttaaggaatttttaagtt----gtctgatatttttttatgttttacag-------------
|||||| ||||||||||||||||| |||||||| ||||| || || ||||| ||||| || || || ||  |||| ||  | || || || ||||| |||||||| |   ||| || |    ||||   ||  | | ||||   | | ||  || ||      ||   |  | |  |||   | |               
TGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGGATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagttatcgttacgaatattgaacttcctttctcttgttgtaattggaattttgaaacctaccacgtatccatggcatcctatttctagttactt

upper sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S26_115V6.1 (Physcomitrella patens), 5'ss of exon 3
TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatctttccattgtgatttatatatcttaaggaatttttaagttgtctgatatttttttatgttttacag-----------------------------
|||||| |||||||||||||||||| ||||||| || |||||||| || || ||||| || || || ||||| || ||  | ||||| || ||||||||||||||    |  || ||  |  || |  | ||||     | ||||  |||   | || ||    |||   | ||                               
TGATGTCACTAAAAGTGGAGATTCACGAGTTGGGCTTGTTGGTTTTCCATCTGTTGGCAAATCTACCCTTCTCAACAAGCTCACAGGAACCTTTTCTGAGgtttg----ccgtcaatcctacttgagctgtcttggcacaattttg-gttccgttatgttaccgtatcactgacttggacagtccctgttccagcgacatggatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28970187|gb|CB349220.1|CB349220
EST:     CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAG                         GTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
genomic: CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatc ... tgttttacagGTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
EST: gi|71857454|gb|DT006509.1|DT006509
EST:     CAGTTGGGAAGTCCACACTTCCAAATAAATTAACAGGCACTTTTTCTGAG                         GTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
genomic: CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatc ... tgttttacagGTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
EST: gi|294965456|gb|GW839027.1|GW839027
EST:     CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAG                         GTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
genomic: CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatc ... tgttttacagGTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
EST: gi|110395805|gb|EC961477.1|EC961477
EST:     CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAG                         GTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG
genomic: CAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatc ... tgttttacagGTTGCTTCCTATGAATTTACTACCTTAACTTGCATTCCTGGTGTGATAACG