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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAATATTGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatgatgcccagtttgatcttttatattgagcttcaccctttcttgttcactagtattttggcattgtatgtgataaatggttttatgaagaatggccttaaaaaatgaaatattgggcttagtgttattgggttctctaagatggttttgtgcattcatctgatttgaagttaataaaattgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g01600.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857264|gb|DT006319.1|DT006319
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTG
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|18458639|gb|BM436917.1|BM436917
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|55778155|gb|AJ862939.1|AJ862939
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGATGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|71854625|gb|DT003680.1|DT003680
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGATGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|30131700|gb|CB917039.1|CB917039
EST:     GGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: GGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|110709925|gb|EE085812.1|EE085812
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTATATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|110713219|gb|EE088948.1|EE088948
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTATATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|349832444|gb|FQ421005.1|FQ421005
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCTTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|161718354|gb|FC065013.1|FC065013
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|110708701|gb|EE086542.1|EE086542
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTATATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|294966086|gb|GW837453.1|GW837453
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTCGAAG                         AATAAGTCACAATAGATTCTGCCGTATATAGATGGACGCTGTATATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: gi|71874768|gb|DT023823.1|DT023823
EST:     TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG                         AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCAATATTGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatgatgcccagtttgatcttttatattgagcttcaccctttcttgttcactagtattttggcattgtatgtgataaatggttttatgaagaatggccttaaaaaatgaaatattgggcttagtgttattgggttctctaagatggttttgtgcattcatctgatttgaagttaataaaattgcag

- - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG