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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCTTGGAAATGCAGCATTATCTGGTCAATTGGTTCCACAACTTGGACAGCTTAAGAATTTACAGTACCTgtaagtcatgtttttgtacacaatcattgcattaacttgagttattggctttgtttcattctatgcactgcattaaatccatgtattggatcctttacct...

Basic information

species Vitis vinifera
transcript Vv07s0031g01410.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 3
TGATCTTGGAAATGCAGCATTATCTGGTCAATTGGTTCCACAACTTGGACAGCTTAAGAATTTACAGTACCTgtaagtcatgtttttgtacacaatcattgcattaacttgagttattggctttgtttcattctatgcactgcattaaatccatgtattggatcctttacct------
||||||||||||||| ||| |||| ||    |||||||| |||||||| ||||| || || || ||||||||||||||  | ||  | | |    |  |||   |||    |  || ||  ||||  |          | |  ||||  |   |   |   | | |||          
TGATCTTGGAAATGCTGCACTATCAGGAACTTTGGTTCCGCAACTTGGCCAGCTCAAAAACTTGCAGTACCTgtaagttctcttcctttgctgtgtt-ttg---taatccca--tactgattttgcatgtggaggaagagtatattagctttctaggtgaaaacatttcaggcatgat