1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGTGGACCAGAAGTGCATGATGAGAAGGGGATAGAATGCATGAGGAATTCTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcatagttgtttcatctcaatctcattccctctttcacttcactcccattgaacttttgggaatgatttttcattttccttttcctttttgttc...
species | Vitis vinifera |
transcript | Vv07s0031g00820.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGTATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATTEST: gi|77579149|gb|DV218402.1|DV218402
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGTATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATTEST: gi|110711473|gb|EE087994.1|EE087994
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGTATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATTEST: gi|34546385|gb|CF514617.1|CF514617
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGTATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATTEST: gi|26261950|gb|CA813013.1|CA813013
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGCATAAAGACGGATGAAATTGATGAAGCAGTTCACCAAATGATTATTEST: gi|110429644|gb|EC996143.1|EC996143
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATTEST: gi|110387367|gb|EC952027.1|EC952027
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGTATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATTEST: gi|33405428|gb|CF211055.1|CF211055
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
EST: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAG CCAGGCATAAAGACGGATGAAATTGATGAAGCAGTTCACCAAATGATTATT
genomic: CTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcat ... caattggcagCCAGGCATAAAGACGGATGAAATTGACGAAGCAGTTCACCAAATGATTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGACCAGAAGTGCATGATGAGAAGGGGATAGAATGCATGAGGAATTCTGGAAGGCTTGCAGCACAGGTCCTTGAATATGCTGGGACTTTAGTCAAGgtgacatcatagttgtttcatctcaatctcattccctctttcacttcactcccattgaacttttgggaatgatttttcattttccttttcctttttgttc
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttcc