1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaactatttttacttcttgtaagtcatgtatttccagttggcctaatgttttcttctacaattttctattaacag
species | Vitis vinifera |
transcript | Vv07s0031g00030.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG CTGGAGCTTTCTAAAGACGTGGTGGTAGCAEST: gi|110684805|gb|EE062504.1|EE062504
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCA
EST: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG CTGGAGCTTTCTAAGGACGTGGTGGTAGNCAAAA-TTACCTCAAGAACTAAEST: gi|30304103|gb|CB980897.1|CB980897
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAG-CAAAAATTACCTCAAGAACTAA
EST: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG CTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAATEST: gi|110374573|gb|EC939425.1|EC939425
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
EST: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG CTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAATEST: gi|110726472|gb|EE102283.1|EE102283
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
EST: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG CTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTATGGTGGAAAGAGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaactatttttacttcttgtaagtcatgtatttccagttggcctaatgttttcttctacaattttctattaacag
- - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - TGAAGA