Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAGTGAAGAAGCCATTGAAGCCATCAAGTCTTTTAGAAACCTTTGTCCCAAACAAGCACAAGAATCACTTGATAACATCCTCATCGACTTATACAAAgtacgccaactaaatatttttctaaaaccaggttatacgtagaaacttccttatataaatgtatatattagtggaagtgaatattggattatacttgtag

Basic information

species Vitis vinifera
transcript Vv07s0005g05770.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G38060.1 (Glycine max), 5'ss of exon 1
TAGAAGTGAAGAAGCCATTGAAGCCATCAAGTCTTTTAGAAACCTTTGTCCCAAACAAGCACAAGAATCACTTGATAACATCCTCATCGACTTATACAAAgtacgccaactaaatatttttctaaaaccaggttatacgtagaaacttccttatataaatgtatatattagtggaagtgaatattggattatacttgtag---
||||  ||||||||| |||||||||||||| |||||||||  ||||||| |||||||  ||||||| |||||||||||  | ||  | ||| | ||||| |||    || | | |||  |||  ||   |  | |||  || ||  ||  || ||    | |||  |  | ||  | ||  ||   | |||   || | |   
TAGATCTGAAGAAGCAATTGAAGCCATCAAATCTTTTAGAGGCCTTTGTTCCAAACACTCACAAGAGTCACTTGATAATGTTCTTCTTGACCTTTACAAGgtattaaaattta-tatgcttcataatatatat-atatataaaatttttatt-tagttttttatgaaaaaatgttaatggttagaaggttagtttttttgtta

upper sequence: Vv07s0005g05770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G47070.1 (Glycine max), 5'ss of exon 2
TAGAAGTGAAGAAGCCATTGAAGCCATCAAGTCTTTTAGAAACCTTTGTCCCAAACAAGCACAAGAATCACTTGATAACATCCTCATCGACTTATACAAAgtacgccaactaaatatttttctaaaaccaggttatacgtagaaacttcctt--atataaatgtata-tattagtggaagtgaatat-tggattatacttgtag
||||  ||||||||| |||||||||||||| |||||||||  ||||||| |||||||  ||||||| |||||||||||  | ||  | ||| | ||||| |||    || |  ||||  |||  ||   |   |  || || ||  ||| ||  |||  | ||  || |||   || ||| || |   |  | ||||  | || 
TAGATCTGAAGAAGCAATTGAAGCCATCAAATCTTTTAGAGGCCTTTGTTCCAAACACTCACAAGAGTCACTTGATAATGTTCTTCTTGACCTTTACAAGgtat-taaaatctatatgcttcataatata---tggacatataattttcatttaatactattgcttactatatatgaaagagattgggtaaaatataggtttat