1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTCAGAGGATATTCAAGTTTATGTCAAGTACTTTGACATAACTTTGATACCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtcttgttgaaaatattatttctttggtttttttttaatcatgttttcactggagaaacattctggaactatggtaaccttatttcaacaaggt...
species | Vitis vinifera |
transcript | Vv07s0005g05620.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGG GAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTTEST: gi|110706484|gb|EE082049.1|EE082049
genomic: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtct ... cttgtttcagGAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTT
EST: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGG GAGTGCAGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTTEST: gi|110388118|gb|EC952836.1|EC952836
genomic: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtct ... cttgtttcagGAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTT
EST: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGG GAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTTEST: gi|30300298|gb|CB977092.1|CB977092
genomic: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtct ... cttgtttcagGAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTT
EST: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGG GAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTT
genomic: CCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtct ... cttgtttcagGAGTGCGGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCAGAGGATATTCAAGTTTATGTCAAGTACTTTGACATAACTTTGATACCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtcttgttgaaaatattatttctttggtttttttttaatcatgttttcactggagaaacattctggaactatggtaaccttatttcaacaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaa