Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgatgaacattagtgatgaaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g05160.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g18690.1 (Oryza sativa), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgatgaacattagtgatgaaaaatc----atatttttcaagttcttttttttttttaa-----ttatcaaatattccttgcag--------------------------------------------
| ||||| || ||  | || || || || ||||| || ||||||||||| || || ||||||||||| ||||| || ||||||||||| || ||||||||||       || | | |    |||  || ||    ||||  |  | ||| ||| | | |  |||     |  |  ||  | || || |                                             
GTGATGGCCCCAAGCTTGTAAGAGAATTGTTTAGGGTGGCTGATGATCTTTCTCCGTCAATTGTCTTTATTGACGAGATTGATGCAGTCGGAACAAAGAGgtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttatag

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G104373_T01 (Zea mays), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcg---atgaacattagtgatgaaaaatcatatttttca--------agttctt-------ttttttttttaattatcaaat-attccttgcag-
| ||||| || ||  | || || || || || || || ||||||||||| || |||||||||||||| |||||||| |||||||| ||||| ||||||||||   ||    |||||  |||         | |    ||  | |        || |  |         | |    || |  | |||  ||||   | || 
GTGATGGTCCCAAGCTTGTTAGAGAATTGTTCAGGGTGGCTGATGATCTTTCTCCTTCAATTGTCTTTATTGATGAGATTGATGCTGTTGGGACAAAGAGgtatatcagacatgaaagttaacagcagttattttctttggttatgaaaaaaagctggtgaaagggcctctagcctagtggttaaaggattctgagtagc

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G19280.1 (Glycine max), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcga----tgaacattagtg---atgaa----aaatcatatttttcaagttctttttt------ttttttaattatcaaatattccttgcag------------------------------------
||||||| |||||| | || || ||  | || ||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |||| | |  |      ||| |||||    |||||       |    ||     |||  | | ||       | | | |      |  |||| || |                                      
GAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacag

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G35510.1 (Glycine max), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgatgaacattagtgatgaaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag---------------------------------------------------------------------------------------
||||||| |||||| | || |||||  | ||  |||||||||||||||| || || || |||||||||||||||||||||||||| |||||||||||||||| |||    ||  || ||   |    | |||  | ||| |||   |||| | |  |   ||  |  || |   ||   |                                                                                       
GAGATGGTCCAAAACTTGTAAGGGAACTTTTCCGAGTTGCTGATGATCTTTCCCCATCTATTGTCTTCATTGATGAAATTGATGCCGTTGGTACAAAGAGgtaagttatcgagtatcagct-tctggagtcac-tgttttaagacattttctatcctctttttccggatgtagttttttgttttgggaggaggcagggggtacaggactggtagaagagtgatatcatgagtcaattcttattatatgtctcttatatgctttgcag

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G04920.1 (Glycine max), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcga----tgaacatta---gtgatgaaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag---------------------------------------------
||||||| |||||| | ||||| ||  | || |||||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| |||| | |  |      ||| |||   || |||||    |      |  |||     |   || | | | | |   |   || | | |                                              
GAGATGGCCCAAAACTTGTGAGAGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATCGATGCAGTTGGTACAAAAAGgtaattttaacccccaactttagctgtcatgaaggtaccggggatggaagagtgatgccttgtatcactctatga-gctcttgggattcttttcctacattcatgagcttaccagtaaatatgtatttacag

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G32800.1 (Glycine max), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgatgaacattagtgatgaaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag----------------------------------------------------------------------------------
||||||| |||||  | || |||||  | ||  |||||||||||||||| || || || ||||||||||||||||| || || || |||||||| ||||||| |||   ||||||| ||   | |  | |||  | | |||||   |||| | | ||   || ||  || ||  || | |                                                                                  
GAGATGGTCCAAAGCTTGTAAGGGAACTTTTCCGAGTTGCTGATGATCTTTCCCCATCTATTGTCTTCATTGATGAGATAGACGCTGTTGGTACTAAGAGgtaagttattgaacatcagcttt-aggagtcac-tgtgtcaagacattttctatcttcttttttctgatttttttttccgggagggggcaggggatgcgggactggttatagagtgatatcatggatcaattcttagtatatgtctcttttatgcattgcag

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgatgaacattagtgatgaaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag---
||||||| || ||  | ||||| ||  | || |||||||||||||| || ||||| ||||| |||||||| ||||| |||||||| |||||||| ||| ||| |||  |   |  ||  | |     |   |||       | |  |  |  || | | ||||     | ||      |    
GAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaactattttcataaacctgatctataaccc---attgataatggttatctgattacttgttgtttgaaagaacag

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S12_207V6.1 (Physcomitrella patens), 5'ss of exon 2
GAGATGGGCCAAAATTAGTGAGGGAGTTATTTAGAGTTGCTGATGATCTCTCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgatgaacattagtgatg----aaaaatcatatttttcaagttcttttttttttttaattatcaaatattccttgcag----------------
| ||||| || || || ||| | ||||||||| | || || |||||  | || ||||| |||||||| ||||| |||||||||||||| |||||||||||||   |    |  | | | |  ||    ||  |||||  |  | |||||||   ||||    |  | |    |     | ||                  
GGGATGGACCTAAGTTGGTGCGAGAGTTATTTCGGGTCGCGGATGAATTATCTCCTTCCATTGTCTTTATTGACGAAATTGATGCAGTGGGTACAAAGAGgtacttttcgggtcctaattattgtaataagcatcattctaattaagttctccattttgagcacctcttcgctgaggttggcgattccattgcggaactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27580875|gb|CB003570.1|CB003570
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|110703456|gb|EE080320.1|EE080320
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|30321368|gb|CD004630.1|CD004630
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|110713467|gb|EE089413.1|EE089413
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACCAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGGAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|71880466|gb|DT029521.1|DT029521
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACT
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACT
EST: gi|110356778|gb|EC919853.1|EC919853
EST:     CACCTTTCA-TTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAG
genomic: CACCTT-CAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAG
EST: gi|26264508|gb|CA815571.1|CA815571
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|27580357|gb|CB003052.1|CB003052
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|71880867|gb|DT029922.1|DT029922
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCA
EST: gi|161714191|gb|FC062936.1|FC062936
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAA-GAG                         GTATGATGCTCA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCA
EST: gi|30297307|gb|CB974101.1|CB974101
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|27580606|gb|CB003301.1|CB003301
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|30131170|gb|CB916509.1|CB916509
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|71864574|gb|DT013629.1|DT013629
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|110392599|gb|EC958132.1|EC958132
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
EST: gi|71881961|gb|DT031016.1|DT031016
EST:     TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAG                         GTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA
genomic: TCACCTTCAATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGgtgagtcgat ... ttccttgcagGTATGATGCTCACTCAGGTGGTGAACGTGAAATCCAGAGGACCATGTTGGA