Sequence
atgc intronic sequence ATGC exonic sequenceCGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaatttctcactgccttggtcattcatttcctgttgaaaattgtgttctgaagtatatgttggttaaaaagttcaccattgtagtgttgaatcccact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os04g43020.1 (Oryza sativa), 5'ss of exon 6
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaattt-ctcact--gccttggtcatt--catttcctgttgaaaattgtgttctgaagtatatgttg-gttaaaaagttcaccattgtagtgttgaatcccact------------------
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CGTAATCTTGTCAAGCTGATCGGTATATGCATTGAACGGAGCACAAGGTGCTTGGTGTTTGAGCTTGTTCCAAACGGAAGTGTGGAGTCTCATCTGCACGgtatgtacacttatttagtctacaccattggcatataagaatctttggtacattttcagcactttcctatgcttcattatacattgttgtgatctgcatatttacttctgttttgatgtttcag
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G32640.1 (Glycine max), 5'ss of exon 7
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaa---atttctcactgccttggtcattcatttcctgttgaaaattgtgttctgaagtatatgttggttaaaaagttcaccattgtagtgttga-atcccact
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CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagtccatgt-acaatttgtgtttctttgc---tgtcttttaaattatttaaatgtttgttaatgatattacag-
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G35390.1 (Glycine max), 5'ss of exon 7
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaa---atttctcactgccttggtcattcatttcctgttgaaaattgtgtt-ctgaagtatatgttggttaa--aaagttcaccattgtagtgttgaatcccact
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CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcccatgt-acaatttgtgtttcttcgttatcttttaattcatttaaatgcttgttaatgatattacag------
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G19030.1 (Glycine max), 5'ss of exon 5
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaa---atttctcactgccttggtcattcatttcctgttgaaaattgtgttctgaagtatatgttggttaaaaagttcaccattgtagtgttgaatcccact-
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CGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTACTTGGTGTATGAGCTTGTTCACAATGGTAGTGTTGAGTCTCATTTGCATGgtaattggctacatattttctttttttttgggtgtgtgccagttgttcaatttataattccttgccatatgttaaattga--attattgttaatgatcctgcag
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G04700.1 (Glycine max), 5'ss of exon 4
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaa---atttctcactgccttggtcattcatttcctgttgaaaattgtgttctgaagtatatgttggttaaaaagttcaccattgtagtgttgaatcccact-
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CGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTGCTTGGTTTATGAGCTTTTTCGCAATGGTAGTGTTGAGTCTCATTTGCATGgtaattggttacatattttctttggttttgggtgtgtgccgcttgttcaatttataatgccttgccatgtgttaaattga--attcttgttaatgatcctgcag
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaatttctcactgccttggtcattcatttcctgttgaa---aattgtgttctgaagtatatgttggttaa------aaagttcaccattgtagtgttgaatcccact-
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CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864431|gb|DT013486.1|DT013486EST: CCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATG GTCCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTG
genomic: CCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaatttct ... ggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaatttctcactgccttggtcattcatttcctgttgaaaattgtgttctgaagtatatgttggttaaaaagttcaccattgtagtgttgaatcccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaag