Sequence
atgc intronic sequence ATGC exonic sequenceTGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtatttatttaagctttcttctgtgaaatattttaatttactgtatcacaatggtacaagaatatgtattctggaagcactgtatccagctaggga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g01260.1 (Oryza sativa), 5'ss of exon 2
TGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtatttatttaagctttcttctgtgaaatatttta-------atttactgtatcacaatggtacaagaatatgtattctggaagcactgtatccagctaggga
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TGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGgtctcttctctacccatcttcctcctctcctatctttcatactagaatgtactgcctcccttctcaaattgcacatgtctcacgccattactgtttttaa-------
upper sequence: Vv07s0005g03760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g34290.1 (Oryza sativa), 5'ss of exon 2
TGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtatttatttaagctttcttctgtg------aaatattttaatttactgtatcacaatggtacaagaatatgtattctggaagcactgtatccagctaggga
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TGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGCTGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGgtatatattctctagtatatcttcctgtctcttgtggacattaaggccccccttgatctgaacgaaaaacattagaactttgtagaatttcaaatcctgt------
upper sequence: Vv07s0005g03760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G34950.1 (Glycine max), 5'ss of exon 4
TGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtggg------tatttattta-agctttcttctgtgaaatattttaatttactgtatcacaatggtacaagaatatgtattctggaagcactgtatccagctaggga
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TGGACGTTGCACGATTTAAGTATCCTCCTCATTGGATCCCACTTAAACTTCTTTGGGAAGGCATGAATTATGTAGATGAGGATACTGGACAATCTAGGGGgtaaagtttcttattttctaatggcctactgttttagaatgttactgaaacctgagatcaacaaccacaaacaagtatagtc---aagggttggtgccagtga----
upper sequence: Vv07s0005g03760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G03980.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtatttatttaagctttcttctgtgaaatattttaatttactgtatcacaatggtacaagaatatgtattctggaa-gcactgtatccagctaggga
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TTGATGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGATGCCATGGATAGTATTGATCAGTCAACAGGGAGACGTAGAGGgtacatggatctctattctttttcttaggcttcacttg----tatgattaaagaatgtaatccgtttctttttgctattctgctttacttccag-------
upper sequence: Vv07s0005g03760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G44070.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtatttatttaagctttcttctgtgaaatattttaatttactgtat-cacaatggtacaagaatatgtattctggaagcactgtatccagctaggga
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TTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatcttttc--ttatctttcgcttaggttcttactgtatcatggatgtaatatttctatataatatggtctgatttttttctgtgttgttctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110379966|gb|EC945197.1|EC945197EST: CTTTGGGAAGCCATGGATAATACTGATGAAACAACCGGGCATCGTAGAGG GTTCATGCTTATATCTAGGCCACAGAGAGCGCCAGCGCTGCTTTATACCTT
genomic: CTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtattt ... tttcttccagGTTCATGCTTATATCTAGGCCACAAAGAGCGCCAGCGCTGCTTTATACCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGGTTCCACTCCCACTTCTTTGGGAAGCCATGGATAATATTGATGAAACAACCGGGCATCGTAGAGGgtgggtatttatttaagctttcttctgtgaaatattttaatttactgtatcacaatggtacaagaatatgtattctggaagcactgtatccagctaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaata