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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatcagtttttgatgttcttagcctatcacgtatcatgctgcattctactgggaattataaagttatacttaaatacctgctaatttatcatatt...

Basic information

species Vitis vinifera
transcript Vv07s0005g02540.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G27890.1 (Glycine max), 5'ss of exon 3
GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatcagtttttgatgttcttagcctatcacgtatcatgctgcattctactgggaattataaagttatacttaaatacctgctaatttatc-atatt---
| |||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||  |||||||||| ||||||||||||    | || |   |  | | ||     | |      || || |    ||||       || ||   ||||   |   ||| |  | |   |   |||||   
GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAGgt-tggagcattgacttgtttgctctcttttttgttattcttgttaacctctaaccaaccttctattattatgtgt---tactttttgacccagggatattcag

upper sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 4
GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgt--gctaatcagtttttgatgttcttagcctatca--cgtatcatgctgcattctactgggaattataaagttatacttaaatacctgctaatttatcatatt
               |||||||||||||| ||||| || ||||||||||| |||||||||||  |||||||||| ||||||||||||  |   ||    || |    ||  |    | | |  | | | |  ||  |  | ||     ||||| | ||  |||||    |||   | || |        
---------------GTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctttcttttttgttattcttgttaacctctaaccgaccttctattatcatgtgttacttttggacccagtgatattctg----

upper sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 3
GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgc-----taatcagtttttgatgtt-----cttagcctatcacgtatca-tgctgcattctactgggaattataaagttatacttaaatac-ctgctaatttatcatatt------------
| || ||| |||||||| || |||||||| || ||||| || ||||||||||||||||| |||||||| || || ||||||||||||       ||   |    || ||||       |||  |  | |  | |||  |   |    ||    | | | |  | || |  |  | | | |   ||||   | | |||            
GGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAGgtagagttatagataaaacttcatgtgaaccatttattcatttagatgtcagcgaatctgattatctagcagttttcatttttgttctagtgcacccttaatgctttagattttatgcttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352782117|gb|FQ470019.1|FQ470019
EST:     TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG                         GTGTTTATGCAGGAGATCCTTCAAAACTGA
genomic: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatca ... ttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGA
EST: gi|352764189|gb|FQ471169.1|FQ471169
EST:     TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG                         GTGTTTATGCAGGAGAACCTTCAAAACTGAGCATGAAAGCAG
genomic: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatca ... ttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAG
EST: gi|110381438|gb|EC934459.1|EC934459
EST:     TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG                         GTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAA
genomic: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatca ... ttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAA