Sequence
atgc intronic sequence ATGC exonic sequenceACAGCTCAGTCAAGTTTTGGATGCTGAATTGGGTCCTGAATGGAAGTCAAAGTTAACCAGTTTTGATTACGAACCACTGGCTGCTGCCAGTATAGGCCAGgtgattaccatctgctagatacttacctttttctatcccatgtgctgcactcttgagtactttaacctttcatgggagtcaagaatgcttttgtgcctta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G00920.1 (Glycine max), 5'ss of exon 3
ACAGCTCAGTCAAGTTTTGGATGCTGAATTGGGTCCTGAATGGAAGTCAAAGTTAACCAGTTTTGATTACGAACCACTGGCTGCTGCCAGTATAGGCCAGgtgattaccatctgctagatacttacctttttctatcccatgtgctgcactcttgagtactttaacct-ttcatgggagtcaagaatgcttttgtgcctta
||||| | ||||||||| |||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| | |||||||| ||||| |||||||| || | | | | | ||||| |||| | | | | ||| | ||| | || ||| |||
CCAGCTTAATCAAGTTTTAAATGCTGAATTAGGTCCTGGCTGGTCATCAAAATTAATTAGTTTTGATTATGAACCTATAGCTGCTGCAAGTATTGGCCAGgtatgtatgcttttttctttttct-ttttttttggggggggacattgcatttgaaaaagtatgagcctgtgcattgtccacacttcaaatttgaaatcttg
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G27970.1 (Glycine max), 5'ss of exon 4
ACAGCTCAGTCAAGTTTTGGATGCTGAATTGGGTCCTGAATGGAAGTCAAAGTTAACCAGTTTTGATTACGAACCACTGGCTGCTGCCAGTATAGGCCAGgtgattaccatctgctagatacttacctttttctatcccatgtgctgcactcttgagtactttaacctttcatgggagtcaa---gaatgct-tttgtgcctta
||||| | ||||||||| |||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| | |||||||| ||||| |||||||| || | || | || ||||||| | | | | | | | | | ||| || | | | || | | | | | |
CCAGCTTAATCAAGTTTTAAATGCTGAATTAGGTCCTGGCTGGTCATCAAAATTAATTAGTTTTGATTATGAACCTATAGCTGCTGCAAGTATTGGCCAGgtatgtatgcttctttacttgtttttttttttctttttcttttttgggag----gggggcattacatttgaaaaagtatgaacctgtgcattgtccacacttcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964960|gb|GW838763.1|GW838763EST: AGTTAACCAGTTTTGATTACGAACCACTGGCTGCTGCCAGTATAGGCCAG GTGCACAAAGCTGTAACAAAAGATGGTTTGGAGGTTGCGATGAAAATTCAG
genomic: AGTTAACCAGTTTTGATTACGAACCACTGGCTGCTGCCAGTATAGGCCAGgtgattacca ... caatgttcagGTGCACAAAGCTGTAACAAAAGATGGTTTGGAGGTTGCGATGAAAATTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGCTCAGTCAAGTTTTGGATGCTGAATTGGGTCCTGAATGGAAGTCAAAGTTAACCAGTTTTGATTACGAACCACTGGCTGCTGCCAGTATAGGCCAGgtgattaccatctgctagatacttacctttttctatcccatgtgctgcactcttgagtactttaacctttcatgggagtcaagaatgcttttgtgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatccc