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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGAAGACAAGCCTGATCTATCAAAATGGTCGCTAAAGTATGAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAGgtaaggatgtcagtgtaccctttttttcctctctttttgtcataatatcaagtcaagctatttttacttcatttgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02120.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G01200.1 (Glycine max), 5'ss of exon 3
GTTTTGGAAGACAAGCCTGATCTATCAAAATGGTCGCTAAAGTATGAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAGgtaaggatgtc---------agtgtaccctttttttcctc------tctttttgtcataatatcaagtcaagctatttttacttcat-------ttgcag
 | |||  |||||| ||||| || |||  ||||||  | |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| || |||  |         | | |||  ||||||| |||      |  | ||    ||  ||        | ||||  || |  ||       ||||||
ATATTGCCAGACAAACCTGACCTGTCACGATGGTCCTTGAAGTATAAGGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCgtaatatgcaggaaaagatccccaacctaatactatacttttttttttctcaataaattctctttagttacaattggtatttgttattcatattatatcaccttcttgcag

upper sequence: Vv07s0005g02120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G41300.1 (Glycine max), 5'ss of exon 2
GTTTTGGAAGACAAGCCTGATCTATCAAAATGGTCGCTAAAGTATGAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAGgtaaggatgtcagtgtaccctttttttcctctctttttgtcataatatcaagtcaagctatttttacttcatttgcag
 | |||  |||||| ||||| ||||||  ||||||  | |||||| | |||||||||| | ||||||||||||||||||||||||| || ||||||| || |||  ||    | | |  |  |   || ||||   |||||  ||   | |                       
ATATTGCCAGACAAACCTGACCTATCACGATGGTCCTTGAAGTATAAGGCATTTGGTCCTAATATTGAATTCTCTTGGCTTGCTCgtaaaatgcaggaaaagatccca----aacttaatactatgcttttttctccataaattctctttag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416576|gb|CF415330.1|CF415330
EST:     AAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAG                         CCAATCCCAAATCAAAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAAC
genomic: AAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAGgtaaggatgt ... tcatttgcagCCAATCCCAAATCAAAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAAC
EST: gi|110700786|gb|EE077744.1|EE077744
EST:     AAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAG                         CCAATCCCAAATCAAAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAAC
genomic: AAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGAAATATGCAGgtaaggatgt ... tcatttgcagCCAATCCCAAATCAAAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAAC