1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCGGAAGGCATTTCTTCTGGCTGATCTAGCTTTGGCAGATGATAGTGGTGTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaatgattaggattaacaagtagatgctgggtagtaggttttatgcaacattttgttggactttgcttgaactagcaaaagctccaactgtaggaggaattacttgccccagcactttcttagttttgattgtccatgtaattgtttgaggcatagtttgattatttgcttccttttttaatttgtgcag
species | Vitis vinifera |
transcript | Vv07s0005g02110.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAG AACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAAEST: gi|110699291|gb|EE076171.1|EE076171
genomic: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaat ... atttgtgcagAACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAA
EST: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAG AACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAAEST: gi|33402946|gb|CF208573.1|CF208573
genomic: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaat ... atttgtgcagAACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAA
EST: GTGAGCAGTTCTTCTGGGACAACAGCACTCACTGCTCTGATATTTGGGAG AACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAAEST: gi|110700065|gb|EE077677.1|EE077677
genomic: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaat ... atttgtgcagAACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAA
EST: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAG AACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAAEST: gi|26264633|gb|CA815696.1|CA815696
genomic: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaat ... atttgtgcagAACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAA
EST: GTGAGTAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAG AACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAA
genomic: GTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaat ... atttgtgcagAACTCTAATGGTTGCCAATGCTGGTGACTGCCGGGCAGTTCTTTGCCGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGGAAGGCATTTCTTCTGGCTGATCTAGCTTTGGCAGATGATAGTGGTGTGAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATATTTGGGAGgtaaattaatgattaggattaacaagtagatgctgggtagtaggttttatgcaacattttgttggactttgcttgaactagcaaaagctccaactgtaggaggaattacttgccccagcactttcttagttttgattgtccatgtaattgtttgaggcatagtttgattatttgcttccttttttaatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG