1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAATGGAAGATACTGTGGTGGATGGTAATGGGACAGAGACTGGTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagtttttgtgatgttatccctctttttggacaacttggttatgtgattgcatgatttttgatcatgacacaaattttcccttttataactgtag
species | Vitis vinifera |
transcript | Vv07s0005g02100.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTEST: gi|161717738|gb|FC065945.1|FC065945
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGT
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAEST: gi|71862885|gb|DT011940.1|DT011940
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAEST: gi|110703118|gb|EE079682.1|EE079682
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAEST: gi|110685785|gb|EE062810.1|EE062810
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAEST: gi|71875370|gb|DT024425.1|DT024425
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAEST: gi|71875374|gb|DT024429.1|DT024429
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
EST: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAG ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
genomic: GTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagttttt ... ataactgtagACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGGAAGATACTGTGGTGGATGGTAATGGGACAGAGACTGGTCATATAATTGTAACAACTATTGGAGGGAAAAATGGCCAGCCAAAGCAGgtaagtttttgtgatgttatccctctttttggacaacttggttatgtgattgcatgatttttgatcatgacacaaattttcccttttataactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG